kaps.control: Control tuning parameters for "kaps" object

In kaps: K-Adaptive Partitioning for Survival data

Description

Tuning parameters for an object "kaps"

Usage

	kaps.control(pre.pt = list(), scope = list(), 
  rho = 0, V = 5, ncl = 1, lower.limit = 0, upper.limit = 100,
  shortcut = TRUE, N.perm = 9999, N.boot = 200, alpha = 0.05,
  splits = c("logrank", "exact"),
  correct = c("Adj.Bf", "Bf", "None"),
  p.adjust.methods = c("none", "holm", "hochberg", 
    "hommel", "bonferroni",  "BH", "BY", "fdr"))

Arguments

pre.pt	list parameter that treats pre-specified split candidates. Use the option as list(var = split points), i.e., x = 1:100
scope	list parameter that treats pre-determined split range. Use the option as list(var = ranges), i.e., x = c(1,100)
rho	scalar parameter that controls the type of logrank test. See survdiff.
V	numeric parameter that determines the number of folds in the cross-validation subgroup selection.
ncl	integer parameter that determines the number of cores to improve computing power
lower.limit	numeric parameter that treats pre-determined overall lower bound. Default is 0.
upper.limit	numeric parameter that treats pre-determined overall upper bound. Default is 100.
shortcut	logical parameter. If shortcut = TRUE, we skip the off-diagonal matrix in pairwise-comparison to reduce computational cost. The default value is TRUE.
N.perm	numeric parameter that gives the number of permutation samples used in the kaps algorithm. The default value is 9999.
N.boot	numeric parameter that gives the number of Bootstrap samples used in the bootstrap and permuting kaps algorithm. The default value is 200.
alpha	numeric parameter that provides a significant level in the process of Bootstrap and permuting algorithm.
splits	character parameter that detemines the kind of pairwise test. Default is logrank test. At this stage, the option exact is not working.

correct	character parameter to select the criteria for the multiple comparison in the simple permuting kaps algorithm.
p.adjust.methods	character parameter to select the criteria for the multiple comparison.

See Also

kaps

kaps documentation built on May 2, 2019, 8:29 a.m.