R/soil.R

In kerntools: Kernel Functions and Tools for Machine Learning Applications

#' Soil microbiota (raw counts)
#'
#' Bacterial abundances in 89 soils from across North and South America.
#'
#' @format A list containing the following elements:
#'  \describe{
#'   \item{abund}{Bacterial abundances of 7396 taxa in 88 sites.}
#'   \item{metadata}{Samples' metadata}
#'   \item{taxonomy}{Taxonomic information}
#' }
#' @references Lauber CL, Hamady M, Knight R, Fierer N. Pyrosequencing-based
#' assessment of soil pH as a predictor of soil bacterial community structure at
#' the continental scale. Appl Environ Microbiol. 2009 Aug;75(15):5111-20.
#' doi: 10.1128/AEM.00335-09.
"soil"