knnIndep: Independence tests and benchmarks
Version 2.0

This package provides the implementation of an exact formula of the ith nearest neighbour distance distribution and implementations of tests of independence based on that formula. Furthermore the package provides a general framework to benchmark tests of independence.

AuthorSebastian Dümcke <duemcke@mpipz.mpg.de>
Date of publication2014-09-11 17:03:09
MaintainerSebastian Dümcke <duemcke@mpipz.mpg.de>
LicenseGPL (>= 3)
Version2.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("knnIndep")

Getting started

Package overview

Popular man pages

generate.benchmark.data: Generating functional dependencies
generate.patchwork.copula: Generate data from a non-functional dependence
generate.paths: Generate all nearest neighbours distances for one point in a...
optimise.copula.mi: optimize the parameter 'c' of 'generate.patchwork.copula'
P_ceq: Probability of observing the ith nearest neighbour at the...
Pc_givena4nn: Probability of observing the ith nearest neighbour at...
P_di: Probability distribution of the distance to the ith nearest...
See all...

All man pages Function index File listing

Man pages

benchmark.patchwork.copula: Benchmark function for a new type of non-functional...
calculate.power: Calculate power at a given significance level
generate.benchmark.data: Generating functional dependencies
generate.patchwork.copula: Generate data from a non-functional dependence
generate.paths: Generate all nearest neighbours distances for one point in a...
generate.roc: Generate ROC curve data
knnIndep-package: A package giving the formulas of an exact distribution of ith...
novelTest.chisq: A novel test of independence
novelTest.extreme: A novel test of independence
optimise.copula.mi: optimize the parameter 'c' of 'generate.patchwork.copula'
parameters: Central probabilty
P_ceq: Probability of observing the ith nearest neighbour at the...
P_cge_aeq: Probability of observing the ith nearest neighbour at a...
P_cge_ale: Probability of observing the ith nearest neighbour at a...
Pc_givena: Probability of observing the ith nearest neighbour at...
Pc_givena4nn: Probability of observing the ith nearest neighbour at...
P_di: Probability distribution of the distance to the ith nearest...
power.plot: Plot power of benchmarked tests of independence
roc.plot: Plot a ROC
run.tests: Run several tests of independence on a benchmark of different...

Functions

P_ceq Man page Source code
P_cge_aeq Man page Source code
P_cge_ale Man page Source code
P_di Man page Source code
Pc_givena Man page Source code
Pc_givena4nn Man page Source code
benchmark.patchwork.copula Man page Source code
calculate.power Man page Source code
generate.benchmark.data Man page Source code
generate.patchwork.copula Man page Source code
generate.paths Man page Source code
generate.roc Man page Source code
knnIndep Man page
knnIndep-package Man page
kr Man page Source code
novelTest.chisq Man page Source code
novelTest.chisq4nn Source code
novelTest.extreme Man page Source code
novelTest.extreme4nn Source code
optimise.copula.mi Man page Source code
parameters Man page Source code
power.plot Man page Source code
roc.plot Man page Source code
run.tests Man page Source code

Files

NAMESPACE
R
R/run.tests.R
R/benchmark.patchwork.copula.R
R/calculate.power.R
R/roc.plot.R
R/optimise.copula.mi.R
R/P_cge_ale.R
R/generate.benchmark.data.R
R/P_di.R
R/P_cge_aeq.R
R/novelTest.extreme.R
R/Pc_givena.R
R/generate.patchwork.copula.R
R/power.plot.R
R/Pc_givena4nn.R
R/generate.roc.R
R/novelTest.extreme4nn.R
R/generate.paths.R
R/novelTest.chisq4nn.R
R/novelTest.chisq.R
R/parameters.R
R/P_ceq.R
MD5
DESCRIPTION
man
man/generate.patchwork.copula.Rd
man/optimise.copula.mi.Rd
man/P_cge_aeq.Rd
man/calculate.power.Rd
man/roc.plot.Rd
man/run.tests.Rd
man/generate.paths.Rd
man/P_di.Rd
man/Pc_givena4nn.Rd
man/parameters.Rd
man/P_cge_ale.Rd
man/knnIndep-package.Rd
man/novelTest.chisq.Rd
man/benchmark.patchwork.copula.Rd
man/P_ceq.Rd
man/novelTest.extreme.Rd
man/generate.roc.Rd
man/generate.benchmark.data.Rd
man/power.plot.Rd
man/Pc_givena.Rd
knnIndep documentation built on May 19, 2017, 2:10 p.m.

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