labdsv: Ordination and Multivariate Analysis for Ecology

A variety of ordination and community analyses useful in analysis of data sets in community ecology. Includes many of the common ordination methods, with graphical routines to facilitate their interpretation, as well as several novel analyses.

Author
David W. Roberts <droberts@montana.edu>
Date of publication
2016-01-24 15:45:28
Maintainer
David W. Roberts <droberts@montana.edu>
License
GPL (>= 2)
Version
1.8-0
URLs

View on CRAN

Man pages

abuocc
Abundance/Occurrence Graphical Analysis
brycesite
Site Data for Bryce Canyon National Park
bryceveg
Bryce Canyon Vegetation Data
compspec
Compositional Specificity Analysis
concov
Constancy-Coverage Table for Ecological Community Data
const
Constancy Table
dematrify
Create Three Column Database Form Data Frame from Sparse Data...
dga
Direct Gradient Analysis
disana
Dissimilarity Analysis
dropplt
Dropping Plots with Missing Values From Taxon and Site Data...
dropspc
Dropping Species with Few Occurrences
dsvdis
Dissimilarity Indices and Distance Measures
envrtest
Environmental Distribution Test
euclidify
Nearest Euclidean Space Representation of a Dissimilarity...
homoteneity
Homoteneity Analysis of Classified Ecological Communities
importance
Importance Table
indval
Dufrene-Legendre Indicator Species Analysis
isamic
Indicator Species Analysis Minimizing Intermediate...
labdsv.internal
LabDSV Internal Functions
matrify
Create Taxon Data.Frames From Three Column Database Form
metrify
Nearest Metric Space Representation of a Dissimilarity Object
nmds
Nonmetric Multidimensional Scaling
ordcomp
Ordination to Dissimilarity Comparison
orddist
Ordination Point Pair-Wise Distance Calculation
ordpart
Ordination Partitioning
ordtaxa
Re-Order the Rows and Columns of a Taxon Data Frame
ordtest
Ordination Distribution Test
pca
Principal Components Analysis
pco
Principal Coordinates Analysis
plot.nmds
Plotting Routines For Nonmetric Multi-Dimensional Scaling...
plot.pca
Plotting Routines For Principal Components Ordinations
plot.pco
Plotting Routines For Principal Coordinates Ordinations
raretaxa
Identify Rare Taxa in a Data Set
reconcile
Reconcile Taxa and Site Data.Frames
rnddist
Random Distance
rndtaxa
Randomize a Taxa Data.Frame
spcdisc
Species Discrimination Analysis
thull
Plotting a Tensioned Hull
vegtab
Vegetation Table
vegtrans
Vegetation Data Transformation

Files in this package

labdsv
labdsv/inst
labdsv/inst/ChangeLog
labdsv/src
labdsv/src/indval.f
labdsv/src/orddist.f
labdsv/src/dsvdis.f
labdsv/src/random.c
labdsv/src/euclid.f
labdsv/src/pip.f
labdsv/src/thull.f
labdsv/src/metric.f
labdsv/NAMESPACE
labdsv/data
labdsv/data/bryceveg.rda
labdsv/data/brycesite.rda
labdsv/R
labdsv/R/vegtab.R
labdsv/R/vegtrans.R
labdsv/R/isamic.R
labdsv/R/indval.R
labdsv/R/ordpart.R
labdsv/R/pca.R
labdsv/R/reconcile.R
labdsv/R/rndtaxa.R
labdsv/R/thull.R
labdsv/R/drop.R
labdsv/R/ordutils.R
labdsv/R/disana.R
labdsv/R/clustify.R
labdsv/R/spcdisc.R
labdsv/R/metrify.R
labdsv/R/dsvdis.R
labdsv/R/ordtaxa.R
labdsv/R/compspec.R
labdsv/R/rnddist.R
labdsv/R/dga.R
labdsv/R/orddist.R
labdsv/R/raretaxa.R
labdsv/R/pco.R
labdsv/R/nmds.R
labdsv/R/euclidify.R
labdsv/R/ordtest.R
labdsv/R/homoteneity.R
labdsv/R/dematrify.R
labdsv/R/concov.R
labdsv/R/ordcomp.R
labdsv/R/importance.R
labdsv/R/envrtest.R
labdsv/R/abuocc.R
labdsv/R/const.R
labdsv/R/subset_dist.R
labdsv/R/matrify.R
labdsv/MD5
labdsv/DESCRIPTION
labdsv/man
labdsv/man/raretaxa.Rd
labdsv/man/dematrify.Rd
labdsv/man/spcdisc.Rd
labdsv/man/compspec.Rd
labdsv/man/dropspc.Rd
labdsv/man/dga.Rd
labdsv/man/disana.Rd
labdsv/man/brycesite.Rd
labdsv/man/vegtrans.Rd
labdsv/man/euclidify.Rd
labdsv/man/plot.pco.Rd
labdsv/man/ordtaxa.Rd
labdsv/man/dropplt.Rd
labdsv/man/reconcile.Rd
labdsv/man/rnddist.Rd
labdsv/man/orddist.Rd
labdsv/man/bryceveg.Rd
labdsv/man/dsvdis.Rd
labdsv/man/homoteneity.Rd
labdsv/man/indval.Rd
labdsv/man/envrtest.Rd
labdsv/man/metrify.Rd
labdsv/man/isamic.Rd
labdsv/man/plot.nmds.Rd
labdsv/man/thull.Rd
labdsv/man/matrify.Rd
labdsv/man/const.Rd
labdsv/man/vegtab.Rd
labdsv/man/pca.Rd
labdsv/man/nmds.Rd
labdsv/man/ordpart.Rd
labdsv/man/abuocc.Rd
labdsv/man/concov.Rd
labdsv/man/ordcomp.Rd
labdsv/man/rndtaxa.Rd
labdsv/man/pco.Rd
labdsv/man/ordtest.Rd
labdsv/man/importance.Rd
labdsv/man/plot.pca.Rd
labdsv/man/labdsv.internal.Rd