labdsv: Ordination and Multivariate Analysis for Ecology

A variety of ordination and community analyses useful in analysis of data sets in community ecology. Includes many of the common ordination methods, with graphical routines to facilitate their interpretation, as well as several novel analyses.

AuthorDavid W. Roberts <droberts@montana.edu>
Date of publication2016-01-24 15:45:28
MaintainerDavid W. Roberts <droberts@montana.edu>
LicenseGPL (>= 2)
Version1.8-0
http://ecology.msu.montana.edu/labdsv/R

View on CRAN

Man pages

abuocc: Abundance/Occurrence Graphical Analysis

brycesite: Site Data for Bryce Canyon National Park

bryceveg: Bryce Canyon Vegetation Data

compspec: Compositional Specificity Analysis

concov: Constancy-Coverage Table for Ecological Community Data

const: Constancy Table

dematrify: Create Three Column Database Form Data Frame from Sparse Data...

dga: Direct Gradient Analysis

disana: Dissimilarity Analysis

dropplt: Dropping Plots with Missing Values From Taxon and Site Data...

dropspc: Dropping Species with Few Occurrences

dsvdis: Dissimilarity Indices and Distance Measures

envrtest: Environmental Distribution Test

euclidify: Nearest Euclidean Space Representation of a Dissimilarity...

homoteneity: Homoteneity Analysis of Classified Ecological Communities

importance: Importance Table

indval: Dufrene-Legendre Indicator Species Analysis

isamic: Indicator Species Analysis Minimizing Intermediate...

labdsv.internal: LabDSV Internal Functions

matrify: Create Taxon Data.Frames From Three Column Database Form

metrify: Nearest Metric Space Representation of a Dissimilarity Object

nmds: Nonmetric Multidimensional Scaling

ordcomp: Ordination to Dissimilarity Comparison

orddist: Ordination Point Pair-Wise Distance Calculation

ordpart: Ordination Partitioning

ordtaxa: Re-Order the Rows and Columns of a Taxon Data Frame

ordtest: Ordination Distribution Test

pca: Principal Components Analysis

pco: Principal Coordinates Analysis

plot.nmds: Plotting Routines For Nonmetric Multi-Dimensional Scaling...

plot.pca: Plotting Routines For Principal Components Ordinations

plot.pco: Plotting Routines For Principal Coordinates Ordinations

raretaxa: Identify Rare Taxa in a Data Set

reconcile: Reconcile Taxa and Site Data.Frames

rnddist: Random Distance

rndtaxa: Randomize a Taxa Data.Frame

spcdisc: Species Discrimination Analysis

thull: Plotting a Tensioned Hull

vegtab: Vegetation Table

vegtrans: Vegetation Data Transformation

Files in this package

labdsv
labdsv/inst
labdsv/inst/ChangeLog
labdsv/src
labdsv/src/indval.f
labdsv/src/orddist.f
labdsv/src/dsvdis.f
labdsv/src/random.c
labdsv/src/euclid.f
labdsv/src/pip.f
labdsv/src/thull.f
labdsv/src/metric.f
labdsv/NAMESPACE
labdsv/data
labdsv/data/bryceveg.rda
labdsv/data/brycesite.rda
labdsv/R
labdsv/R/vegtab.R labdsv/R/vegtrans.R labdsv/R/isamic.R labdsv/R/indval.R labdsv/R/ordpart.R labdsv/R/pca.R labdsv/R/reconcile.R labdsv/R/rndtaxa.R labdsv/R/thull.R labdsv/R/drop.R labdsv/R/ordutils.R labdsv/R/disana.R labdsv/R/clustify.R labdsv/R/spcdisc.R labdsv/R/metrify.R labdsv/R/dsvdis.R labdsv/R/ordtaxa.R labdsv/R/compspec.R labdsv/R/rnddist.R labdsv/R/dga.R labdsv/R/orddist.R labdsv/R/raretaxa.R labdsv/R/pco.R labdsv/R/nmds.R labdsv/R/euclidify.R labdsv/R/ordtest.R labdsv/R/homoteneity.R labdsv/R/dematrify.R labdsv/R/concov.R labdsv/R/ordcomp.R labdsv/R/importance.R labdsv/R/envrtest.R labdsv/R/abuocc.R labdsv/R/const.R labdsv/R/subset_dist.R labdsv/R/matrify.R
labdsv/MD5
labdsv/DESCRIPTION
labdsv/man
labdsv/man/raretaxa.Rd labdsv/man/dematrify.Rd labdsv/man/spcdisc.Rd labdsv/man/compspec.Rd labdsv/man/dropspc.Rd labdsv/man/dga.Rd labdsv/man/disana.Rd labdsv/man/brycesite.Rd labdsv/man/vegtrans.Rd labdsv/man/euclidify.Rd labdsv/man/plot.pco.Rd labdsv/man/ordtaxa.Rd labdsv/man/dropplt.Rd labdsv/man/reconcile.Rd labdsv/man/rnddist.Rd labdsv/man/orddist.Rd labdsv/man/bryceveg.Rd labdsv/man/dsvdis.Rd labdsv/man/homoteneity.Rd labdsv/man/indval.Rd labdsv/man/envrtest.Rd labdsv/man/metrify.Rd labdsv/man/isamic.Rd labdsv/man/plot.nmds.Rd labdsv/man/thull.Rd labdsv/man/matrify.Rd labdsv/man/const.Rd labdsv/man/vegtab.Rd labdsv/man/pca.Rd labdsv/man/nmds.Rd labdsv/man/ordpart.Rd labdsv/man/abuocc.Rd labdsv/man/concov.Rd labdsv/man/ordcomp.Rd labdsv/man/rndtaxa.Rd labdsv/man/pco.Rd labdsv/man/ordtest.Rd labdsv/man/importance.Rd labdsv/man/plot.pca.Rd labdsv/man/labdsv.internal.Rd

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