indval: Dufrene-Legendre Indicator Species Analysis

Description Usage Arguments Details Value Note Author(s) References See Also Examples

View source: R/indval.R

Description

Calculates the indicator value (fidelity and relative abundance) of species in clusters or types.

Usage

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indval(x, ...)
## Default S3 method:
indval(x,clustering,numitr=1000,...)
## S3 method for class 'stride'
indval(x,taxa,numitr=1,...)
## S3 method for class 'indval'
summary(object, p=0.05, type='short', digits=2, show=p,
       sort=FALSE, too.many=100, ...)

Arguments

x

a matrix or data.frame of samples with species as columns and samples as rows, or an object of class ‘stride’ from function stride

clustering

a vector of numeric cluster memberships for samples, or a classification object returned from pam, or optpart, slice, or archi

numitr

the number of randomizations to iterate to calculate probabilities

taxa

a dataframe with samples as rows and species as columns

object

an object of class ‘indval’

p

the maximum probability for a species to be listed in the summary

type

a switch to choose between ‘short’ and ‘long’ style summary

digits

the number of significant digits to show

show

the threshold to show values as opposed to a dot column place-holder

sort

a switch to control user-managed interactive table sorting

too.many

a threshold reduce the listing for large data sets

...

additional arguments to the summary or generic function

Details

Calculates the indicator value ‘d’ of species as the product of the relative frequency and relative average abundance in clusters. Specifically,

where:
p_{i,j} = presence/absence (1/0) of species i in sample j;
x_{i,j} = abundance of species i in sample j;
n_c = number of samples in cluster c;
for cluster c in set K;

f_{i,c} = {∑_{j \in c} p_{i,j} \over n_c}


a_{i,c} = {(∑_{j \in c} x_{i,j}) / n_c \over ∑_{k=1}^K ((∑_{j \in k} x_{i,j}) / n_k)}


d_{i,c} = f_{i,c} \times a_{i,c}


Calculated on a ‘stride’ the function calculates the indicator values of species for each of the separate partitions in the stride.

Value

The default function returns a list of class ‘indval’ with components:

relfrq

relative frequency of species in classes

relabu

relative abundance of species in classes

indval

the indicator value for each species

maxcls

the class each species has maximum indicator value for

indcls

the indicator value for each species to its maximum class

pval

the probability of obtaining as high an indicator values as observed over the specified iterations

The stride-based function returns a data.frame with the number of clusters in the first column and the mean indicator value in the second.

The ‘summary’ function has two options. In ‘short’ mode it presents a table of indicator species whose probability is less then ‘p’, giving their indicator val;ue and the identity of the cluster they indicate, along with the sum of probabilities for the entire data set. In ‘long’ mode, the indicator value of each species in each class is shown, with values less than ‘show’ replaced by a place-holder dot to emphasize larger values.

If ‘sort==TRUE’, a prompt is given to re-order the rows of the matrix interactively.

Note

Indicator value analysis was proposed by Dufrene and Legendre (1997) as a possible stopping rule for clustering, but has been used by ecologists for a variety of analyses. Dufrene and Legendre's nomenclature in the paper is somewhat ambiguous, but the equations above are taken from the worked example in the paper, not the equations on page 350 which appear to be in error. Dufrene and Legendre, however, multiply d by 100; this function does not.

Author(s)

David W. Roberts [email protected]

References

Dufrene, M. and Legendre, P. 1997. Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol. Monogr. 67(3):345-366.

See Also

isamic

Examples

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    data(bryceveg) # returns a vegetation data.frame
    dis.bc <- dsvdis(bryceveg,'bray/curtis') # returns a dissimilarity matrix
    clust <- sample(1:5,nrow(bryceveg),replace=TRUE)
    indval(bryceveg,clust)

Example output

Loading required package: mgcv
Loading required package: nlme
This is mgcv 1.8-17. For overview type 'help("mgcv-package")'.
Loading required package: MASS
Loading required package: cluster

Attaching package: 'labdsv'

The following object is masked from 'package:stats':

    density

$relfrq
                  1          2          3          4          5
junost   0.00000000 0.03333333 0.05714286 0.00000000 0.02564103
ameuta   0.13043478 0.16666667 0.25714286 0.06060606 0.10256410
arcpat   0.43478261 0.53333333 0.48571429 0.48484848 0.38461538
arttri   0.17391304 0.06666667 0.05714286 0.09090909 0.10256410
atrcan   0.13043478 0.03333333 0.08571429 0.12121212 0.05128205
berfre   0.04347826 0.10000000 0.00000000 0.03030303 0.02564103
ceamar   0.34782609 0.40000000 0.45714286 0.33333333 0.30769231
cerled   0.00000000 0.03333333 0.00000000 0.06060606 0.05128205
cermon   0.04347826 0.23333333 0.22857143 0.27272727 0.20512821
chrdep   0.00000000 0.00000000 0.02857143 0.00000000 0.00000000
chrnau   0.00000000 0.00000000 0.00000000 0.03030303 0.02564103
chrpar   0.04347826 0.06666667 0.02857143 0.00000000 0.07692308
chrvis   0.26086957 0.23333333 0.25714286 0.24242424 0.28205128
eurlan   0.04347826 0.03333333 0.05714286 0.06060606 0.00000000
juncom   0.30434783 0.33333333 0.22857143 0.15151515 0.23076923
pacmyr   0.39130435 0.30000000 0.22857143 0.33333333 0.28205128
pruvir   0.00000000 0.03333333 0.02857143 0.00000000 0.00000000
purtri   0.30434783 0.40000000 0.37142857 0.42424242 0.46153846
quegam   0.08695652 0.06666667 0.17142857 0.21212121 0.15384615
rhutri   0.00000000 0.03333333 0.00000000 0.03030303 0.00000000
ribcer   0.26086957 0.13333333 0.11428571 0.21212121 0.20512821
roswoo   0.00000000 0.00000000 0.02857143 0.06060606 0.00000000
samcoe   0.04347826 0.06666667 0.11428571 0.00000000 0.05128205
shearg   0.00000000 0.00000000 0.02857143 0.00000000 0.00000000
sherot   0.00000000 0.06666667 0.00000000 0.03030303 0.10256410
symore   0.52173913 0.53333333 0.42857143 0.54545455 0.51282051
arcuva   0.00000000 0.00000000 0.00000000 0.00000000 0.02564103
artarb   0.17391304 0.23333333 0.31428571 0.12121212 0.28205128
artfri   0.13043478 0.13333333 0.05714286 0.03030303 0.10256410
artpyg   0.00000000 0.00000000 0.02857143 0.03030303 0.00000000
atrcon   0.00000000 0.00000000 0.02857143 0.00000000 0.00000000
berrep   0.34782609 0.50000000 0.48571429 0.36363636 0.41025641
ericor   0.00000000 0.00000000 0.02857143 0.03030303 0.10256410
gutsar   0.04347826 0.03333333 0.05714286 0.06060606 0.17948718
tetcan   0.13043478 0.20000000 0.22857143 0.21212121 0.28205128
agrcri   0.04347826 0.00000000 0.02857143 0.03030303 0.00000000
agrdas   0.08695652 0.03333333 0.11428571 0.00000000 0.07692308
agrscr   0.04347826 0.00000000 0.00000000 0.00000000 0.00000000
agrsmi   0.13043478 0.06666667 0.08571429 0.12121212 0.02564103
bougra   0.08695652 0.16666667 0.17142857 0.09090909 0.10256410
broano   0.08695652 0.10000000 0.02857143 0.03030303 0.10256410
brocil   0.00000000 0.06666667 0.00000000 0.00000000 0.05128205
broine   0.04347826 0.00000000 0.00000000 0.06060606 0.00000000
carrss   0.56521739 0.56666667 0.57142857 0.48484848 0.53846154
elysal   0.00000000 0.00000000 0.08571429 0.06060606 0.07692308
fesovi   0.00000000 0.06666667 0.02857143 0.00000000 0.00000000
hiljam   0.00000000 0.03333333 0.00000000 0.03030303 0.00000000
junbal   0.08695652 0.03333333 0.00000000 0.06060606 0.05128205
koenit   0.21739130 0.23333333 0.17142857 0.12121212 0.17948718
muhmon   0.08695652 0.06666667 0.02857143 0.03030303 0.05128205
muhric   0.04347826 0.00000000 0.00000000 0.03030303 0.00000000
oryhym   0.34782609 0.20000000 0.28571429 0.15151515 0.35897436
orymic   0.00000000 0.03333333 0.05714286 0.03030303 0.00000000
phlpra   0.00000000 0.03333333 0.00000000 0.00000000 0.00000000
poacom   0.00000000 0.00000000 0.00000000 0.00000000 0.05128205
poafen   0.17391304 0.26666667 0.31428571 0.12121212 0.17948718
poanev   0.04347826 0.06666667 0.02857143 0.00000000 0.07692308
poapra   0.04347826 0.00000000 0.02857143 0.09090909 0.02564103
sithys   0.30434783 0.26666667 0.31428571 0.21212121 0.35897436
sticom   0.17391304 0.20000000 0.28571429 0.18181818 0.17948718
stilet   0.00000000 0.00000000 0.02857143 0.03030303 0.00000000
stipin   0.04347826 0.10000000 0.08571429 0.06060606 0.05128205
achmil   0.26086957 0.10000000 0.08571429 0.24242424 0.17948718
agogla   0.13043478 0.10000000 0.05714286 0.06060606 0.15384615
anemul   0.00000000 0.03333333 0.00000000 0.00000000 0.00000000
antros   0.08695652 0.00000000 0.00000000 0.00000000 0.00000000
antros.1 0.04347826 0.03333333 0.05714286 0.06060606 0.02564103
apoand   0.00000000 0.06666667 0.02857143 0.03030303 0.05128205
arahol   0.00000000 0.00000000 0.05714286 0.03030303 0.00000000
arapen   0.04347826 0.00000000 0.00000000 0.00000000 0.02564103
arefen   0.04347826 0.00000000 0.02857143 0.00000000 0.00000000
artcar   0.00000000 0.00000000 0.00000000 0.03030303 0.00000000
artlud   0.08695652 0.03333333 0.00000000 0.00000000 0.05128205
astagr   0.04347826 0.00000000 0.05714286 0.00000000 0.02564103
astchi   0.04347826 0.00000000 0.00000000 0.00000000 0.00000000
astcon   0.13043478 0.06666667 0.05714286 0.09090909 0.12820513
asthum   0.08695652 0.10000000 0.02857143 0.06060606 0.05128205
astken   0.00000000 0.00000000 0.08571429 0.06060606 0.00000000
astmeg   0.04347826 0.10000000 0.05714286 0.06060606 0.05128205
astmis   0.13043478 0.33333333 0.02857143 0.21212121 0.20512821
astten   0.00000000 0.00000000 0.00000000 0.03030303 0.00000000
balsag   0.04347826 0.03333333 0.00000000 0.00000000 0.00000000
calnut   0.17391304 0.16666667 0.22857143 0.15151515 0.07692308
caschr   0.04347826 0.10000000 0.20000000 0.06060606 0.05128205
caslin   0.21739130 0.13333333 0.14285714 0.12121212 0.10256410
chadou   0.17391304 0.03333333 0.08571429 0.06060606 0.02564103
cirneo   0.04347826 0.00000000 0.00000000 0.06060606 0.05128205
compal   0.00000000 0.00000000 0.11428571 0.00000000 0.02564103
corkin   0.17391304 0.10000000 0.08571429 0.12121212 0.10256410
creint   0.00000000 0.00000000 0.00000000 0.03030303 0.02564103
crycon   0.04347826 0.06666667 0.00000000 0.09090909 0.07692308
cympur   0.00000000 0.03333333 0.02857143 0.00000000 0.00000000
dessop   0.04347826 0.00000000 0.00000000 0.00000000 0.00000000
drasub   0.17391304 0.20000000 0.08571429 0.06060606 0.17948718
echtri   0.00000000 0.00000000 0.00000000 0.03030303 0.00000000
eriala   0.04347826 0.13333333 0.22857143 0.24242424 0.17948718
erican   0.04347826 0.00000000 0.02857143 0.06060606 0.00000000
erieat   0.00000000 0.00000000 0.00000000 0.03030303 0.00000000
erifla   0.00000000 0.06666667 0.05714286 0.12121212 0.05128205
eripan   0.04347826 0.03333333 0.02857143 0.00000000 0.02564103
eripum   0.00000000 0.06666667 0.11428571 0.03030303 0.02564103
erirac   0.26086957 0.26666667 0.22857143 0.15151515 0.23076923
erisub   0.04347826 0.00000000 0.00000000 0.00000000 0.00000000
eriumb   0.13043478 0.10000000 0.08571429 0.00000000 0.02564103
eupfen   0.04347826 0.03333333 0.14285714 0.06060606 0.07692308
euplur   0.17391304 0.16666667 0.17142857 0.09090909 0.17948718
euprob   0.04347826 0.03333333 0.05714286 0.06060606 0.02564103
fraves   0.00000000 0.03333333 0.00000000 0.03030303 0.00000000
genaff   0.04347826 0.00000000 0.00000000 0.00000000 0.00000000
gerfre   0.00000000 0.06666667 0.05714286 0.09090909 0.00000000
gerric   0.04347826 0.00000000 0.00000000 0.00000000 0.00000000
gilcon   0.08695652 0.03333333 0.08571429 0.06060606 0.12820513
haparm   0.00000000 0.03333333 0.08571429 0.09090909 0.05128205
heddru   0.00000000 0.00000000 0.00000000 0.00000000 0.02564103
hymaca   0.08695652 0.13333333 0.11428571 0.09090909 0.07692308
hymfil   0.04347826 0.13333333 0.14285714 0.15151515 0.07692308
hymric   0.13043478 0.10000000 0.22857143 0.39393939 0.12820513
ipoagg   0.00000000 0.00000000 0.02857143 0.06060606 0.00000000
irimis   0.00000000 0.00000000 0.00000000 0.03030303 0.02564103
ivesab   0.00000000 0.00000000 0.00000000 0.00000000 0.02564103
leppun   0.17391304 0.13333333 0.20000000 0.12121212 0.07692308
lesint   0.04347826 0.10000000 0.14285714 0.15151515 0.12820513
leueri   0.00000000 0.03333333 0.00000000 0.00000000 0.00000000
ligpor   0.00000000 0.03333333 0.00000000 0.00000000 0.00000000
linkin   0.13043478 0.06666667 0.08571429 0.00000000 0.07692308
linlew   0.17391304 0.16666667 0.08571429 0.12121212 0.23076923
litinc   0.00000000 0.03333333 0.00000000 0.00000000 0.00000000
litmul   0.08695652 0.03333333 0.14285714 0.09090909 0.10256410
lotuta   0.26086957 0.16666667 0.17142857 0.15151515 0.15384615
lupkin   0.04347826 0.00000000 0.05714286 0.03030303 0.00000000
lupser   0.08695652 0.06666667 0.02857143 0.00000000 0.02564103
lyggra   0.08695652 0.00000000 0.00000000 0.03030303 0.05128205
lygspi   0.00000000 0.00000000 0.02857143 0.00000000 0.00000000
macgri   0.08695652 0.10000000 0.22857143 0.18181818 0.05128205
molpar   0.04347826 0.00000000 0.02857143 0.06060606 0.00000000
oenbra   0.00000000 0.06666667 0.05714286 0.03030303 0.10256410
oencae   0.04347826 0.03333333 0.08571429 0.00000000 0.05128205
oencor   0.04347826 0.00000000 0.02857143 0.03030303 0.05128205
oenfla   0.04347826 0.00000000 0.00000000 0.00000000 0.00000000
oenlav   0.13043478 0.16666667 0.14285714 0.09090909 0.17948718
opueri   0.08695652 0.03333333 0.05714286 0.12121212 0.17948718
orofas   0.00000000 0.03333333 0.02857143 0.03030303 0.00000000
pedcan   0.21739130 0.26666667 0.14285714 0.21212121 0.23076923
pedsim   0.00000000 0.00000000 0.02857143 0.03030303 0.02564103
pencae   0.13043478 0.13333333 0.02857143 0.15151515 0.17948718
pencom   0.04347826 0.10000000 0.17142857 0.09090909 0.05128205
penlei   0.00000000 0.00000000 0.00000000 0.03030303 0.00000000
penuta   0.04347826 0.00000000 0.00000000 0.00000000 0.00000000
phllon   0.00000000 0.03333333 0.00000000 0.03030303 0.07692308
phycha   0.00000000 0.10000000 0.02857143 0.03030303 0.00000000
potcon   0.04347826 0.03333333 0.00000000 0.00000000 0.00000000
potcri   0.04347826 0.03333333 0.00000000 0.00000000 0.05128205
potgra   0.00000000 0.03333333 0.05714286 0.00000000 0.02564103
pteand   0.08695652 0.03333333 0.02857143 0.03030303 0.05128205
pyrvir   0.00000000 0.00000000 0.00000000 0.03030303 0.00000000
salibe   0.00000000 0.00000000 0.00000000 0.03030303 0.00000000
sclwhi   0.00000000 0.06666667 0.00000000 0.03030303 0.00000000
senmul   0.39130435 0.53333333 0.45714286 0.48484848 0.46153846
sphcoc   0.17391304 0.00000000 0.11428571 0.06060606 0.07692308
stapin   0.00000000 0.00000000 0.02857143 0.00000000 0.00000000
steten   0.08695652 0.03333333 0.02857143 0.03030303 0.00000000
strcor   0.00000000 0.00000000 0.00000000 0.03030303 0.00000000
swerad   0.08695652 0.20000000 0.22857143 0.15151515 0.10256410
taroff   0.04347826 0.06666667 0.00000000 0.00000000 0.05128205
thafen   0.04347826 0.03333333 0.00000000 0.00000000 0.00000000
towmin   0.04347826 0.00000000 0.00000000 0.00000000 0.02564103
tradub   0.13043478 0.00000000 0.08571429 0.03030303 0.07692308
valacu   0.00000000 0.03333333 0.00000000 0.00000000 0.00000000
vicame   0.00000000 0.00000000 0.02857143 0.00000000 0.00000000

$relabu
                  1          2          3          4          5
junost   0.00000000 0.28706625 0.49211356 0.00000000 0.22082019
ameuta   0.16240831 0.20752173 0.42690184 0.07546245 0.12770568
arcpat   0.17208313 0.20389243 0.22873647 0.19462460 0.20066337
arttri   0.34460782 0.14226118 0.13935789 0.29560764 0.07816548
atrcan   0.40620714 0.06228509 0.21354890 0.19817985 0.11977903
berfre   0.24232360 0.44587542 0.00000000 0.16889220 0.14290879
ceamar   0.23436546 0.16684589 0.26401987 0.18668071 0.14808807
cerled   0.00000000 0.18990704 0.00000000 0.51792829 0.29216467
cermon   0.05426955 0.20803327 0.21397707 0.28368173 0.24003838
chrdep   0.00000000 0.00000000 1.00000000 0.00000000 0.00000000
chrnau   0.00000000 0.00000000 0.00000000 0.54166667 0.45833333
chrpar   0.10396436 0.39853003 0.06831943 0.00000000 0.42918618
chrvis   0.16682738 0.16444413 0.26624287 0.14949466 0.25299096
eurlan   0.10829309 0.08302471 0.35582017 0.45286203 0.00000000
juncom   0.17066898 0.33365785 0.23832703 0.11895110 0.13839504
pacmyr   0.25487816 0.19540659 0.14888121 0.21711843 0.18371560
pruvir   0.00000000 0.53846154 0.46153846 0.00000000 0.00000000
purtri   0.14307965 0.20841935 0.19744991 0.18947214 0.26157895
quegam   0.06135972 0.14112736 0.30241577 0.27797813 0.21711901
rhutri   0.00000000 0.52380952 0.00000000 0.47619048 0.00000000
ribcer   0.31401435 0.13756819 0.11791559 0.21885849 0.21164337
roswoo   0.00000000 0.00000000 0.32038835 0.67961165 0.00000000
samcoe   0.14288705 0.21909348 0.46948603 0.00000000 0.16853344
shearg   0.00000000 0.00000000 1.00000000 0.00000000 0.00000000
sherot   0.00000000 0.38683499 0.00000000 0.11722272 0.49594229
symore   0.22171590 0.22664292 0.15541229 0.19573707 0.20049182
arcuva   0.00000000 0.00000000 0.00000000 0.00000000 1.00000000
artarb   0.17416599 0.21512725 0.22890387 0.10790082 0.27390207
artfri   0.20680916 0.36995861 0.09060211 0.04804657 0.28458355
artpyg   0.00000000 0.00000000 0.65346535 0.34653465 0.00000000
atrcon   0.00000000 0.00000000 1.00000000 0.00000000 0.00000000
berrep   0.18050943 0.23065094 0.19770080 0.17823027 0.21290856
ericor   0.00000000 0.00000000 0.15272339 0.16197935 0.68529726
gutsar   0.11623721 0.08911520 0.15276891 0.16202763 0.47985106
tetcan   0.10616509 0.16278648 0.20929690 0.27131080 0.25044073
agrcri   0.42478853 0.00000000 0.27914675 0.29606473 0.00000000
agrdas   0.50754501 0.06485297 0.27794131 0.00000000 0.14966071
agrscr   1.00000000 0.00000000 0.00000000 0.00000000 0.00000000
agrsmi   0.40059562 0.19195207 0.09871821 0.27920301 0.02953109
bougra   0.12257168 0.23492905 0.24164131 0.25628624 0.14457172
broano   0.36903135 0.22633923 0.04850126 0.05144073 0.30468742
brocil   0.00000000 0.56521739 0.00000000 0.00000000 0.43478261
broine   0.41772152 0.00000000 0.00000000 0.58227848 0.00000000
carrss   0.27989822 0.19592875 0.16793893 0.16963528 0.18659881
elysal   0.00000000 0.00000000 0.37998229 0.33584293 0.28417479
fesovi   0.00000000 0.70000000 0.30000000 0.00000000 0.00000000
hiljam   0.00000000 0.52380952 0.00000000 0.47619048 0.00000000
junbal   0.28238547 0.28866070 0.00000000 0.26241882 0.16653502
koenit   0.21416590 0.26271017 0.19703263 0.14926714 0.17682415
muhmon   0.16749541 0.19261972 0.11006841 0.23347844 0.29633803
muhric   0.26400000 0.00000000 0.00000000 0.73600000 0.00000000
oryhym   0.24875952 0.14303672 0.22477199 0.10836115 0.27507062
orymic   0.00000000 0.27598566 0.47311828 0.25089606 0.00000000
phlpra   0.00000000 1.00000000 0.00000000 0.00000000 0.00000000
poacom   0.00000000 0.00000000 0.00000000 0.00000000 1.00000000
poafen   0.19946426 0.28399912 0.29960346 0.09930039 0.11763277
poanev   0.08348879 0.32004037 0.05486406 0.00000000 0.54160678
poapra   0.17716605 0.00000000 0.05821170 0.55565716 0.20896509
sithys   0.20225259 0.17056635 0.27910858 0.16915672 0.17891576
sticom   0.16391214 0.19421105 0.28397246 0.15578426 0.20212010
stilet   0.00000000 0.00000000 0.48529412 0.51470588 0.00000000
stipin   0.11855929 0.27268636 0.23373116 0.16526446 0.20975874
achmil   0.30036959 0.11514167 0.09869286 0.27913133 0.20666454
agogla   0.25981479 0.19919134 0.11382362 0.12072202 0.30644822
anemul   0.00000000 1.00000000 0.00000000 0.00000000 0.00000000
antros   1.00000000 0.00000000 0.00000000 0.00000000 0.00000000
antros.1 0.19744758 0.15137648 0.25950253 0.27522996 0.11644345
apoand   0.00000000 0.37702448 0.16158192 0.17137476 0.29001883
arahol   0.00000000 0.00000000 0.65346535 0.34653465 0.00000000
arapen   0.62903226 0.00000000 0.00000000 0.00000000 0.37096774
arefen   0.60344828 0.00000000 0.39655172 0.00000000 0.00000000
artcar   0.00000000 0.00000000 0.00000000 1.00000000 0.00000000
artlud   0.50682261 0.19428200 0.00000000 0.00000000 0.29889539
astagr   0.34434914 0.00000000 0.45257316 0.00000000 0.20307770
astchi   1.00000000 0.00000000 0.00000000 0.00000000 0.00000000
astcon   0.27555178 0.14083757 0.12071792 0.19205124 0.27084149
asthum   0.26558417 0.30542179 0.08726337 0.18510412 0.15662656
astken   0.00000000 0.00000000 0.58579882 0.41420118 0.00000000
astmeg   0.13912633 0.31999055 0.18285174 0.19393367 0.16409772
astmis   0.14339970 0.36646590 0.03141136 0.23320557 0.22551747
astten   0.00000000 0.00000000 0.00000000 1.00000000 0.00000000
balsag   0.72289157 0.27710843 0.00000000 0.00000000 0.00000000
calnut   0.21804835 0.20896300 0.28657783 0.18996636 0.09644446
caschr   0.09547974 0.21960339 0.43920678 0.13309296 0.11261712
caslin   0.30304437 0.18586721 0.19914344 0.16897019 0.14297478
chadou   0.45862207 0.08790256 0.22603516 0.15982284 0.06761736
cirneo   0.27984344 0.00000000 0.00000000 0.39008480 0.33007175
compal   0.00000000 0.00000000 0.81675393 0.00000000 0.18324607
corkin   0.29810076 0.17140794 0.14692109 0.20776720 0.17580301
creint   0.00000000 0.00000000 0.00000000 0.54166667 0.45833333
crycon   0.15640951 0.23982791 0.00000000 0.32703806 0.27672452
cympur   0.00000000 0.53846154 0.46153846 0.00000000 0.00000000
dessop   1.00000000 0.00000000 0.00000000 0.00000000 0.00000000
drasub   0.24854642 0.28582838 0.12249788 0.08661466 0.25651265
echtri   0.00000000 0.00000000 0.00000000 1.00000000 0.00000000
eriala   0.05255476 0.16116793 0.27628788 0.29303260 0.21695683
erican   0.32775255 0.00000000 0.21538025 0.45686720 0.00000000
erieat   0.00000000 0.00000000 0.00000000 1.00000000 0.00000000
erifla   0.00000000 0.22499438 0.19285233 0.40908069 0.17307260
eripan   0.33183420 0.25440622 0.21806248 0.00000000 0.19569709
eripum   0.00000000 0.28141692 0.48242901 0.12791678 0.10823728
erirac   0.22915617 0.23424853 0.20078446 0.13309576 0.20271508
erisub   1.00000000 0.00000000 0.00000000 0.00000000 0.00000000
eriumb   0.38162248 0.29257723 0.25078049 0.00000000 0.07501980
eupfen   0.12172038 0.09331896 0.39993839 0.16967083 0.21535144
euplur   0.22228020 0.21301853 0.21910477 0.11619192 0.22940457
euprob   0.19744758 0.15137648 0.25950253 0.27522996 0.11644345
fraves   0.00000000 0.52380952 0.00000000 0.47619048 0.00000000
genaff   1.00000000 0.00000000 0.00000000 0.00000000 0.00000000
gerfre   0.00000000 0.31048387 0.26612903 0.42338710 0.00000000
gerric   1.00000000 0.00000000 0.00000000 0.00000000 0.00000000
gilcon   0.22024606 0.08442766 0.21709969 0.15350483 0.32472176
haparm   0.00000000 0.12759720 0.32810707 0.34799235 0.19630338
heddru   0.00000000 0.00000000 0.00000000 0.00000000 1.00000000
hymaca   0.17307958 0.26538869 0.22747602 0.18094684 0.15310886
hymfil   0.07932441 0.24326152 0.26063734 0.27643355 0.14034318
hymric   0.12895773 0.09886759 0.22598307 0.41943828 0.12675333
ipoagg   0.00000000 0.00000000 0.32038835 0.67961165 0.00000000
irimis   0.00000000 0.00000000 0.00000000 0.54166667 0.45833333
ivesab   0.00000000 0.00000000 0.00000000 0.00000000 1.00000000
leppun   0.24655172 0.18902299 0.28353448 0.17183908 0.10905172
lesint   0.07680916 0.17666107 0.25237295 0.26766828 0.22648855
leueri   0.00000000 1.00000000 0.00000000 0.00000000 0.00000000
ligpor   0.00000000 1.00000000 0.00000000 0.00000000 0.00000000
linkin   0.33845772 0.17298950 0.22241508 0.00000000 0.26613770
linlew   0.22345953 0.21414872 0.11013363 0.15574452 0.29651361
litinc   0.00000000 1.00000000 0.00000000 0.00000000 0.00000000
litmul   0.19043512 0.07300013 0.31285770 0.19909126 0.22461578
lotuta   0.28846847 0.18429930 0.18956499 0.16754482 0.17012243
lupkin   0.33208741 0.00000000 0.43645773 0.23145486 0.00000000
lupser   0.41839080 0.32076628 0.13747126 0.00000000 0.12337165
lyggra   0.51593506 0.00000000 0.00000000 0.17979555 0.30426939
lygspi   0.00000000 0.00000000 1.00000000 0.00000000 0.00000000
macgri   0.13406220 0.15417153 0.35239207 0.28031187 0.07906232
molpar   0.32775255 0.00000000 0.21538025 0.45686720 0.00000000
oenbra   0.00000000 0.25973015 0.22262584 0.11805916 0.39958485
oencae   0.20335196 0.15590317 0.40089385 0.00000000 0.23985102
oencor   0.28299753 0.00000000 0.18596981 0.19724070 0.33379196
oenfla   1.00000000 0.00000000 0.00000000 0.00000000 0.00000000
oenlav   0.17538907 0.26892991 0.19209279 0.12224087 0.24134736
opueri   0.18186718 0.06971575 0.11951272 0.25351183 0.37539252
orofas   0.00000000 0.36150235 0.30985915 0.32863850 0.00000000
pedcan   0.20320637 0.24926648 0.13353561 0.19828016 0.21571138
pedsim   0.00000000 0.00000000 0.33806147 0.35855004 0.30338849
pencae   0.20925079 0.21390081 0.04583589 0.24306910 0.28794340
pencom   0.09511803 0.21877148 0.37503682 0.19888316 0.11219050
penlei   0.00000000 0.00000000 0.00000000 1.00000000 0.00000000
penuta   1.00000000 0.00000000 0.00000000 0.00000000 0.00000000
phllon   0.00000000 0.23714760 0.00000000 0.21558872 0.54726368
phycha   0.00000000 0.62942779 0.17983651 0.19073569 0.00000000
potcon   0.56603774 0.43396226 0.00000000 0.00000000 0.00000000
potcri   0.33942559 0.26022628 0.00000000 0.00000000 0.40034813
potgra   0.00000000 0.28706625 0.49211356 0.00000000 0.22082019
pteand   0.37733952 0.14464682 0.12398299 0.13149711 0.22253357
pyrvir   0.00000000 0.00000000 0.00000000 1.00000000 0.00000000
salibe   0.00000000 0.00000000 0.00000000 1.00000000 0.00000000
sclwhi   0.00000000 0.68750000 0.00000000 0.31250000 0.00000000
senmul   0.16807397 0.22907859 0.19635308 0.20825327 0.19824109
sphcoc   0.40850751 0.00000000 0.26844779 0.14235868 0.18068602
stapin   0.00000000 0.00000000 1.00000000 0.00000000 0.00000000
steten   0.48534510 0.18604895 0.15947053 0.16913541 0.00000000
strcor   0.00000000 0.00000000 0.00000000 1.00000000 0.00000000
swerad   0.11298819 0.25987283 0.29699752 0.19687335 0.13326812
taroff   0.26933702 0.41298343 0.00000000 0.00000000 0.31767956
thafen   0.56603774 0.43396226 0.00000000 0.00000000 0.00000000
towmin   0.62903226 0.00000000 0.00000000 0.00000000 0.37096774
tradub   0.57484319 0.00000000 0.18887705 0.06677471 0.16950504
valacu   0.00000000 1.00000000 0.00000000 0.00000000 0.00000000
vicame   0.00000000 0.00000000 1.00000000 0.00000000 0.00000000

$indval
                   1           2            3           4            5
junost   0.000000000 0.009568875 0.0281207751 0.000000000 0.0056620561
ameuta   0.021183692 0.034586955 0.1097747587 0.004573482 0.0130980183
arcpat   0.074818752 0.108742632 0.1111005715 0.094363441 0.0771782188
arttri   0.059931794 0.009484078 0.0079633078 0.026873422 0.0080169724
atrcan   0.052983540 0.002076170 0.0183041910 0.024021799 0.0061425142
berfre   0.010535808 0.044587542 0.0000000000 0.005117946 0.0036643279
ceamar   0.081518422 0.066738355 0.1206947967 0.062226905 0.0455655590
cerled   0.000000000 0.006330235 0.0000000000 0.031389593 0.0149828038
cermon   0.002359546 0.048541096 0.0489090455 0.077367744 0.0492386430
chrdep   0.000000000 0.000000000 0.0285714286 0.000000000 0.0000000000
chrnau   0.000000000 0.000000000 0.0000000000 0.016414141 0.0117521368
chrpar   0.004520189 0.026568669 0.0019519838 0.000000000 0.0330143218
chrvis   0.043520185 0.038370296 0.0684624529 0.036241130 0.0713564259
eurlan   0.004708395 0.002767490 0.0203325810 0.027446184 0.0000000000
juncom   0.051942732 0.111219283 0.0544747508 0.018022895 0.0319373158
pacmyr   0.099734933 0.058621977 0.0340299914 0.072372812 0.0518172201
pruvir   0.000000000 0.017948718 0.0131868132 0.000000000 0.0000000000
purtri   0.043545980 0.083367741 0.0733385394 0.080382120 0.1207287441
quegam   0.005335628 0.009408491 0.0518427036 0.058965058 0.0334029254
rhutri   0.000000000 0.017460317 0.0000000000 0.014430014 0.0000000000
ribcer   0.081916788 0.018342426 0.0134760678 0.046424528 0.0434140253
roswoo   0.000000000 0.000000000 0.0091539528 0.041188585 0.0000000000
samcoe   0.006212480 0.014606232 0.0536555458 0.000000000 0.0086427408
shearg   0.000000000 0.000000000 0.0285714286 0.000000000 0.0000000000
sherot   0.000000000 0.025788999 0.0000000000 0.003552204 0.0508658759
symore   0.115677862 0.120876225 0.0666052670 0.106765674 0.1028163159
arcuva   0.000000000 0.000000000 0.0000000000 0.000000000 0.0256410256
artarb   0.030289737 0.050196359 0.0719412172 0.013078887 0.0772544301
artfri   0.026975108 0.049327815 0.0051772634 0.001455957 0.0291880561
artpyg   0.000000000 0.000000000 0.0186704385 0.010501050 0.0000000000
atrcon   0.000000000 0.000000000 0.0285714286 0.000000000 0.0000000000
berrep   0.062785889 0.115325469 0.0960261048 0.064811007 0.0873471008
ericor   0.000000000 0.000000000 0.0043635254 0.004908465 0.0702868983
gutsar   0.005053792 0.002970507 0.0087296519 0.009819856 0.0861271125
tetcan   0.013847621 0.032557295 0.0478392913 0.057550775 0.0706371302
agrcri   0.018469066 0.000000000 0.0079756213 0.008971658 0.0000000000
agrdas   0.044134348 0.002161766 0.0317647215 0.000000000 0.0115123621
agrscr   0.043478261 0.000000000 0.0000000000 0.000000000 0.0000000000
agrsmi   0.052251603 0.012796805 0.0084615606 0.033842789 0.0007572074
bougra   0.010658407 0.039154842 0.0414242245 0.023298749 0.0148278691
broano   0.032089683 0.022633923 0.0013857504 0.001558810 0.0312499921
brocil   0.000000000 0.037681159 0.0000000000 0.000000000 0.0222965440
broine   0.018161805 0.000000000 0.0000000000 0.035289605 0.0000000000
carrss   0.158203341 0.111026293 0.0959651036 0.082247410 0.1004762837
elysal   0.000000000 0.000000000 0.0325699102 0.020354117 0.0218595989
fesovi   0.000000000 0.046666667 0.0085714286 0.000000000 0.0000000000
hiljam   0.000000000 0.017460317 0.0000000000 0.014430014 0.0000000000
junbal   0.024555258 0.009622023 0.0000000000 0.015904171 0.0085402574
koenit   0.046557805 0.061299040 0.0337770221 0.018092987 0.0317376687
muhmon   0.014564818 0.012841314 0.0031448117 0.007075104 0.0151968218
muhric   0.011478261 0.000000000 0.0000000000 0.022303030 0.0000000000
oryhym   0.086525049 0.028607344 0.0642205689 0.016418356 0.0987432990
orymic   0.000000000 0.009199522 0.0270353303 0.007602911 0.0000000000
phlpra   0.000000000 0.033333333 0.0000000000 0.000000000 0.0000000000
poacom   0.000000000 0.000000000 0.0000000000 0.000000000 0.0512820513
poafen   0.034689437 0.075733098 0.0941610883 0.012036411 0.0211135741
poanev   0.003629947 0.021336025 0.0015675447 0.000000000 0.0416620598
poapra   0.007702872 0.000000000 0.0016631915 0.050514287 0.0053580791
sithys   0.061555137 0.045484361 0.0877198394 0.035881727 0.0642261690
sticom   0.028506459 0.038842210 0.0811349876 0.028324411 0.0362779658
stilet   0.000000000 0.000000000 0.0138655462 0.015597148 0.0000000000
stipin   0.005154752 0.027268636 0.0200340997 0.010016028 0.0107568583
achmil   0.078357283 0.011514167 0.0084593883 0.067668202 0.0370936361
agogla   0.033888886 0.019919134 0.0065042071 0.007316486 0.0471458796
anemul   0.000000000 0.033333333 0.0000000000 0.000000000 0.0000000000
antros   0.086956522 0.000000000 0.0000000000 0.000000000 0.0000000000
antros.1 0.008584677 0.005045883 0.0148287163 0.016680604 0.0029857294
apoand   0.000000000 0.025134965 0.0046166263 0.005193175 0.0148727606
arahol   0.000000000 0.000000000 0.0373408769 0.010501050 0.0000000000
arapen   0.027349229 0.000000000 0.0000000000 0.000000000 0.0095119934
arefen   0.026236882 0.000000000 0.0113300493 0.000000000 0.0000000000
artcar   0.000000000 0.000000000 0.0000000000 0.030303030 0.0000000000
artlud   0.044071531 0.006476067 0.0000000000 0.000000000 0.0153279685
astagr   0.014971702 0.000000000 0.0258613233 0.000000000 0.0052071205
astchi   0.043478261 0.000000000 0.0000000000 0.000000000 0.0000000000
astcon   0.035941536 0.009389172 0.0068981669 0.017459203 0.0347232679
asthum   0.023094275 0.030542179 0.0024932391 0.011218431 0.0080321312
astken   0.000000000 0.000000000 0.0502113271 0.025103102 0.0000000000
astmeg   0.006048971 0.031999055 0.0104486710 0.011753556 0.0084152676
astmis   0.018704308 0.122155298 0.0008974675 0.049467848 0.0462599947
astten   0.000000000 0.000000000 0.0000000000 0.030303030 0.0000000000
balsag   0.031430068 0.009236948 0.0000000000 0.000000000 0.0000000000
calnut   0.037921452 0.034827167 0.0655035036 0.028782782 0.0074188047
caschr   0.004151293 0.021960339 0.0878413567 0.008066240 0.0057752371
caslin   0.065879211 0.024782295 0.0284490633 0.020481236 0.0146640800
chadou   0.079760360 0.002930085 0.0193744426 0.009686233 0.0017337784
cirneo   0.012167106 0.000000000 0.0000000000 0.023641503 0.0169267567
compal   0.000000000 0.000000000 0.0933433059 0.000000000 0.0046986173
corkin   0.051843611 0.017140794 0.0125932363 0.025183903 0.0180310783
creint   0.000000000 0.000000000 0.0000000000 0.016414141 0.0117521368
crycon   0.006800413 0.015988528 0.0000000000 0.029730733 0.0212865012
cympur   0.000000000 0.017948718 0.0131868132 0.000000000 0.0000000000
dessop   0.043478261 0.000000000 0.0000000000 0.000000000 0.0000000000
drasub   0.043225465 0.057165677 0.0104998182 0.005249373 0.0460407326
echtri   0.000000000 0.000000000 0.0000000000 0.030303030 0.0000000000
eriala   0.002284990 0.021489057 0.0631515155 0.071038206 0.0389409693
erican   0.014250111 0.000000000 0.0061537214 0.027688921 0.0000000000
erieat   0.000000000 0.000000000 0.0000000000 0.030303030 0.0000000000
erifla   0.000000000 0.014999625 0.0110201329 0.049585538 0.0088755180
eripan   0.014427574 0.008480207 0.0062303565 0.000000000 0.0050178742
eripum   0.000000000 0.018761128 0.0551347444 0.003876266 0.0027753148
erirac   0.059779872 0.062466276 0.0458935903 0.020166024 0.0467804024
erisub   0.043478261 0.000000000 0.0000000000 0.000000000 0.0000000000
eriumb   0.049776845 0.029257723 0.0214954702 0.000000000 0.0019235847
eupfen   0.005292190 0.003110632 0.0571340557 0.010283081 0.0165654954
euplur   0.038657427 0.035503088 0.0375608182 0.010562902 0.0411751792
euprob   0.008584677 0.005045883 0.0148287163 0.016680604 0.0029857294
fraves   0.000000000 0.017460317 0.0000000000 0.014430014 0.0000000000
genaff   0.043478261 0.000000000 0.0000000000 0.000000000 0.0000000000
gerfre   0.000000000 0.020698925 0.0152073733 0.038489736 0.0000000000
gerric   0.043478261 0.000000000 0.0000000000 0.000000000 0.0000000000
gilcon   0.019151832 0.002814255 0.0186085449 0.009303323 0.0416309947
haparm   0.000000000 0.004253240 0.0281234635 0.031635668 0.0100668399
heddru   0.000000000 0.000000000 0.0000000000 0.000000000 0.0256410256
hymaca   0.015050399 0.035385159 0.0259972598 0.016449712 0.0117776048
hymfil   0.003448887 0.032434869 0.0372339061 0.041883870 0.0107956296
hymric   0.016820574 0.009886759 0.0516532736 0.165233261 0.0162504264
ipoagg   0.000000000 0.000000000 0.0091539528 0.041188585 0.0000000000
irimis   0.000000000 0.000000000 0.0000000000 0.016414141 0.0117521368
ivesab   0.000000000 0.000000000 0.0000000000 0.000000000 0.0256410256
leppun   0.042878561 0.025203065 0.0567068966 0.020828979 0.0083885942
lesint   0.003339529 0.017666107 0.0360532786 0.040555800 0.0290369930
leueri   0.000000000 0.033333333 0.0000000000 0.000000000 0.0000000000
ligpor   0.000000000 0.033333333 0.0000000000 0.000000000 0.0000000000
linkin   0.044146660 0.011532634 0.0190641493 0.000000000 0.0204721306
linlew   0.038862527 0.035691453 0.0094400250 0.018878124 0.0684262170
litinc   0.000000000 0.033333333 0.0000000000 0.000000000 0.0000000000
litmul   0.016559576 0.002433338 0.0446939571 0.018099206 0.0230375164
lotuta   0.075252643 0.030716550 0.0324968557 0.025385578 0.0261726813
lupkin   0.014438583 0.000000000 0.0249404420 0.007013784 0.0000000000
lupser   0.036381809 0.021384419 0.0039277504 0.000000000 0.0031633756
lyggra   0.044863918 0.000000000 0.0000000000 0.005448350 0.0156035586
lygspi   0.000000000 0.000000000 0.0285714286 0.000000000 0.0000000000
macgri   0.011657583 0.015417153 0.0805467590 0.050965795 0.0040544781
molpar   0.014250111 0.000000000 0.0061537214 0.027688921 0.0000000000
oenbra   0.000000000 0.017315343 0.0127214768 0.003577550 0.0409830612
oencae   0.008841389 0.005196772 0.0343623304 0.000000000 0.0123000525
oencor   0.012304240 0.000000000 0.0053134230 0.005976991 0.0171175364
oenfla   0.043478261 0.000000000 0.0000000000 0.000000000 0.0000000000
oenlav   0.022876835 0.044821652 0.0274418276 0.011112806 0.0433187561
opueri   0.015814538 0.002323858 0.0068292983 0.030728707 0.0673781440
orofas   0.000000000 0.012050078 0.0088531187 0.009958742 0.0000000000
pedcan   0.044175298 0.066471062 0.0190765164 0.042059427 0.0497795488
pedsim   0.000000000 0.000000000 0.0096588990 0.010865153 0.0077791922
pencae   0.027293582 0.028520108 0.0013095968 0.036828652 0.0516821489
pencom   0.004135567 0.021877148 0.0642920265 0.018080288 0.0057533591
penlei   0.000000000 0.000000000 0.0000000000 0.030303030 0.0000000000
penuta   0.043478261 0.000000000 0.0000000000 0.000000000 0.0000000000
phllon   0.000000000 0.007904920 0.0000000000 0.006532992 0.0420972063
phycha   0.000000000 0.062942779 0.0051381861 0.005779870 0.0000000000
potcon   0.024610336 0.014465409 0.0000000000 0.000000000 0.0000000000
potcri   0.014757634 0.008674209 0.0000000000 0.000000000 0.0205306733
potgra   0.000000000 0.009568875 0.0281207751 0.000000000 0.0056620561
pteand   0.032812133 0.004821561 0.0035423710 0.003984761 0.0114119777
pyrvir   0.000000000 0.000000000 0.0000000000 0.030303030 0.0000000000
salibe   0.000000000 0.000000000 0.0000000000 0.030303030 0.0000000000
sclwhi   0.000000000 0.045833333 0.0000000000 0.009469697 0.0000000000
senmul   0.065768075 0.122175250 0.0897614082 0.100971281 0.0914958880
sphcoc   0.071044785 0.000000000 0.0306797479 0.008627799 0.0138989242
stapin   0.000000000 0.000000000 0.0285714286 0.000000000 0.0000000000
steten   0.042203922 0.006201632 0.0045563009 0.005125316 0.0000000000
strcor   0.000000000 0.000000000 0.0000000000 0.030303030 0.0000000000
swerad   0.009825060 0.051974565 0.0678851467 0.029829296 0.0136685248
taroff   0.011710305 0.027532228 0.0000000000 0.000000000 0.0162912594
thafen   0.024610336 0.014465409 0.0000000000 0.000000000 0.0000000000
towmin   0.027349229 0.000000000 0.0000000000 0.000000000 0.0095119934
tradub   0.074979547 0.000000000 0.0161894613 0.002023476 0.0130388495
valacu   0.000000000 0.033333333 0.0000000000 0.000000000 0.0000000000
vicame   0.000000000 0.000000000 0.0285714286 0.000000000 0.0000000000

$maxcls
  junost   ameuta   arcpat   arttri   atrcan   berfre   ceamar   cerled 
       3        3        3        1        1        2        3        4 
  cermon   chrdep   chrnau   chrpar   chrvis   eurlan   juncom   pacmyr 
       4        3        4        5        5        4        2        1 
  pruvir   purtri   quegam   rhutri   ribcer   roswoo   samcoe   shearg 
       2        5        4        2        1        4        3        3 
  sherot   symore   arcuva   artarb   artfri   artpyg   atrcon   berrep 
       5        2        5        5        2        3        3        2 
  ericor   gutsar   tetcan   agrcri   agrdas   agrscr   agrsmi   bougra 
       5        5        5        1        1        1        1        3 
  broano   brocil   broine   carrss   elysal   fesovi   hiljam   junbal 
       1        2        4        1        3        2        2        1 
  koenit   muhmon   muhric   oryhym   orymic   phlpra   poacom   poafen 
       2        5        4        5        3        2        5        3 
  poanev   poapra   sithys   sticom   stilet   stipin   achmil   agogla 
       5        4        3        3        4        2        1        5 
  anemul   antros antros.1   apoand   arahol   arapen   arefen   artcar 
       2        1        4        2        3        1        1        4 
  artlud   astagr   astchi   astcon   asthum   astken   astmeg   astmis 
       1        3        1        1        2        3        2        2 
  astten   balsag   calnut   caschr   caslin   chadou   cirneo   compal 
       4        1        3        3        1        1        4        3 
  corkin   creint   crycon   cympur   dessop   drasub   echtri   eriala 
       1        4        4        2        1        2        4        4 
  erican   erieat   erifla   eripan   eripum   erirac   erisub   eriumb 
       4        4        4        1        3        2        1        1 
  eupfen   euplur   euprob   fraves   genaff   gerfre   gerric   gilcon 
       3        5        4        2        1        4        1        5 
  haparm   heddru   hymaca   hymfil   hymric   ipoagg   irimis   ivesab 
       4        5        2        4        4        4        4        5 
  leppun   lesint   leueri   ligpor   linkin   linlew   litinc   litmul 
       3        4        2        2        1        5        2        3 
  lotuta   lupkin   lupser   lyggra   lygspi   macgri   molpar   oenbra 
       1        3        1        1        3        3        4        5 
  oencae   oencor   oenfla   oenlav   opueri   orofas   pedcan   pedsim 
       3        5        1        2        5        2        2        4 
  pencae   pencom   penlei   penuta   phllon   phycha   potcon   potcri 
       5        3        4        1        5        2        1        5 
  potgra   pteand   pyrvir   salibe   sclwhi   senmul   sphcoc   stapin 
       3        1        4        4        2        2        1        3 
  steten   strcor   swerad   taroff   thafen   towmin   tradub   valacu 
       1        4        3        2        1        1        1        2 
  vicame 
       3 

$indcls
    junost     ameuta     arcpat     arttri     atrcan     berfre     ceamar 
0.02812078 0.10977476 0.11110057 0.05993179 0.05298354 0.04458754 0.12069480 
    cerled     cermon     chrdep     chrnau     chrpar     chrvis     eurlan 
0.03138959 0.07736774 0.02857143 0.01641414 0.03301432 0.07135643 0.02744618 
    juncom     pacmyr     pruvir     purtri     quegam     rhutri     ribcer 
0.11121928 0.09973493 0.01794872 0.12072874 0.05896506 0.01746032 0.08191679 
    roswoo     samcoe     shearg     sherot     symore     arcuva     artarb 
0.04118858 0.05365555 0.02857143 0.05086588 0.12087623 0.02564103 0.07725443 
    artfri     artpyg     atrcon     berrep     ericor     gutsar     tetcan 
0.04932781 0.01867044 0.02857143 0.11532547 0.07028690 0.08612711 0.07063713 
    agrcri     agrdas     agrscr     agrsmi     bougra     broano     brocil 
0.01846907 0.04413435 0.04347826 0.05225160 0.04142422 0.03208968 0.03768116 
    broine     carrss     elysal     fesovi     hiljam     junbal     koenit 
0.03528960 0.15820334 0.03256991 0.04666667 0.01746032 0.02455526 0.06129904 
    muhmon     muhric     oryhym     orymic     phlpra     poacom     poafen 
0.01519682 0.02230303 0.09874330 0.02703533 0.03333333 0.05128205 0.09416109 
    poanev     poapra     sithys     sticom     stilet     stipin     achmil 
0.04166206 0.05051429 0.08771984 0.08113499 0.01559715 0.02726864 0.07835728 
    agogla     anemul     antros   antros.1     apoand     arahol     arapen 
0.04714588 0.03333333 0.08695652 0.01668060 0.02513497 0.03734088 0.02734923 
    arefen     artcar     artlud     astagr     astchi     astcon     asthum 
0.02623688 0.03030303 0.04407153 0.02586132 0.04347826 0.03594154 0.03054218 
    astken     astmeg     astmis     astten     balsag     calnut     caschr 
0.05021133 0.03199905 0.12215530 0.03030303 0.03143007 0.06550350 0.08784136 
    caslin     chadou     cirneo     compal     corkin     creint     crycon 
0.06587921 0.07976036 0.02364150 0.09334331 0.05184361 0.01641414 0.02973073 
    cympur     dessop     drasub     echtri     eriala     erican     erieat 
0.01794872 0.04347826 0.05716568 0.03030303 0.07103821 0.02768892 0.03030303 
    erifla     eripan     eripum     erirac     erisub     eriumb     eupfen 
0.04958554 0.01442757 0.05513474 0.06246628 0.04347826 0.04977684 0.05713406 
    euplur     euprob     fraves     genaff     gerfre     gerric     gilcon 
0.04117518 0.01668060 0.01746032 0.04347826 0.03848974 0.04347826 0.04163099 
    haparm     heddru     hymaca     hymfil     hymric     ipoagg     irimis 
0.03163567 0.02564103 0.03538516 0.04188387 0.16523326 0.04118858 0.01641414 
    ivesab     leppun     lesint     leueri     ligpor     linkin     linlew 
0.02564103 0.05670690 0.04055580 0.03333333 0.03333333 0.04414666 0.06842622 
    litinc     litmul     lotuta     lupkin     lupser     lyggra     lygspi 
0.03333333 0.04469396 0.07525264 0.02494044 0.03638181 0.04486392 0.02857143 
    macgri     molpar     oenbra     oencae     oencor     oenfla     oenlav 
0.08054676 0.02768892 0.04098306 0.03436233 0.01711754 0.04347826 0.04482165 
    opueri     orofas     pedcan     pedsim     pencae     pencom     penlei 
0.06737814 0.01205008 0.06647106 0.01086515 0.05168215 0.06429203 0.03030303 
    penuta     phllon     phycha     potcon     potcri     potgra     pteand 
0.04347826 0.04209721 0.06294278 0.02461034 0.02053067 0.02812078 0.03281213 
    pyrvir     salibe     sclwhi     senmul     sphcoc     stapin     steten 
0.03030303 0.03030303 0.04583333 0.12217525 0.07104478 0.02857143 0.04220392 
    strcor     swerad     taroff     thafen     towmin     tradub     valacu 
0.03030303 0.06788515 0.02753223 0.02461034 0.02734923 0.07497955 0.03333333 
    vicame 
0.02857143 

$pval
  junost   ameuta   arcpat   arttri   atrcan   berfre   ceamar   cerled 
   0.543    0.071    0.954    0.370    0.411    0.247    0.485    0.492 
  cermon   chrdep   chrnau   chrpar   chrvis   eurlan   juncom   pacmyr 
   0.567    0.738    0.789    0.594    0.913    0.671    0.250    0.580 
  pruvir   purtri   quegam   rhutri   ribcer   roswoo   samcoe   shearg 
   0.624    0.613    0.669    0.723    0.367    0.211    0.270    0.742 
  sherot   symore   arcuva   artarb   artfri   artpyg   atrcon   berrep 
   0.220    0.930    1.000    0.680    0.561    0.788    0.765    0.782 
  ericor   gutsar   tetcan   agrcri   agrdas   agrscr   agrsmi   bougra 
   0.090    0.079    0.800    0.704    0.470    0.132    0.474    0.913 
  broano   brocil   broine   carrss   elysal   fesovi   hiljam   junbal 
   0.802    0.233    0.363    0.483    0.694    0.145    0.724    0.806 
  koenit   muhmon   muhric   oryhym   orymic   phlpra   poacom   poafen 
   0.775    0.984    0.763    0.443    0.583    0.322    0.190    0.365 
  poanev   poapra   sithys   sticom   stilet   stipin   achmil   agogla 
   0.429    0.252    0.826    0.517    0.883    0.898    0.391    0.636 
  anemul   antros antros.1   apoand   arahol   arapen   arefen   artcar 
   0.348    0.018    0.974    0.639    0.310    0.269    0.307    0.539 
  artlud   astagr   astchi   astcon   asthum   astken   astmeg   astmis 
   0.259    0.626    0.130    0.852    0.759    0.163    0.711    0.070 
  astten   balsag   calnut   caschr   caslin   chadou   cirneo   compal 
   0.576    0.344    0.576    0.097    0.432    0.079    0.662    0.022 
  corkin   creint   crycon   cympur   dessop   drasub   echtri   eriala 
   0.587    0.796    0.692    0.593    0.139    0.668    0.532    0.551 
  erican   erieat   erifla   eripan   eripum   erirac   erisub   eriumb 
   0.571    0.517    0.391    0.887    0.278    0.901    0.144    0.357 
  eupfen   euplur   euprob   fraves   genaff   gerfre   gerric   gilcon 
   0.311    0.989    0.967    0.721    0.140    0.379    0.163    0.609 
  haparm   heddru   hymaca   hymfil   hymric   ipoagg   irimis   ivesab 
   0.632    1.000    0.846    0.851    0.010    0.247    0.802    1.000 
  leppun   lesint   leueri   ligpor   linkin   linlew   litinc   litmul 
   0.721    0.883    0.312    0.331    0.489    0.505    0.343    0.636 
  lotuta   lupkin   lupser   lyggra   lygspi   macgri   molpar   oenbra 
   0.501    0.651    0.521    0.209    0.789    0.220    0.566    0.450 
  oencae   oencor   oenfla   oenlav   opueri   orofas   pedcan   pedsim 
   0.522    0.925    0.145    0.886    0.219    0.941    0.787    1.000 
  pencae   pencom   penlei   penuta   phllon   phycha   potcon   potcri 
   0.645    0.229    0.534    0.132    0.357    0.089    0.421    0.820 
  potgra   pteand   pyrvir   salibe   sclwhi   senmul   sphcoc   stapin 
   0.559    0.603    0.563    0.561    0.164    0.830    0.144    0.741 
  steten   strcor   swerad   taroff   thafen   towmin   tradub   valacu 
   0.373    0.545    0.520    0.508    0.439    0.274    0.101    0.337 
  vicame 
   0.768 

$error
[1] 0

attr(,"class")
[1] "indval"

labdsv documentation built on May 30, 2017, 12:46 a.m.