laser: Likelihood Analysis of Speciation/Extinction Rates from Phylogenies

laser implements maximum likelihood methods based on the birth-death process to test whether diversification rates have changed over time and whether rates vary among lineages.

AuthorDan Rabosky, Klaus Schliep
Date of publication2013-09-04 14:58:43
MaintainerDan Rabosky <drabosky@umich.edu>
LicenseGPL (>= 2)
Version2.4-1

View on CRAN

Files in this package

laser
laser/NAMESPACE
laser/NEWS
laser/data
laser/data/agamids.txt.gz
laser/data/warblers.rda
laser/data/agamids.rda
laser/data/rtrees5.rda
laser/data/plethodon.rda
laser/data/warblers.txt.gz
laser/data/rtrees50.rda
laser/data/rtrees50.txt.gz
laser/data/rtrees5.txt.gz
laser/R
laser/R/yuleSim.R laser/R/birthdeathSim.R laser/R/calcLHbd.R laser/R/gamStat.R laser/R/getLikelihood.EXVAR.R laser/R/lambda.stem.ci.R laser/R/DDL.R laser/R/pTt.BOTHVAR.R laser/R/plotRate.R laser/R/fitEXVAR.R laser/R/gsr.R laser/R/getLikelihood.BOTHVAR.R laser/R/getSpeciationtimes.R laser/R/fitSPVAR.R laser/R/fitBOTHVAR.R laser/R/pTt.EXVAR.R laser/R/DDX.R laser/R/rhoFxn.EXVAR.R laser/R/getBtimes.R laser/R/getBtimes.batch.R laser/R/lambda.crown.ms01.R laser/R/mccrTest.R laser/R/lambdaFx.R laser/R/combinations.R laser/R/fitdAICrc.batch.R laser/R/rhoFxn.SPVAR.R laser/R/pureBirth.R laser/R/getLikelihood.SPVAR.R laser/R/bd.R laser/R/lambda.stem.ms01.R laser/R/plotLtt.R laser/R/scaleBranchingtimes.R laser/R/lamda.stem.ml.R laser/R/yuleNrate.R laser/R/muFx.R laser/R/plotNodeNumbers.phylo.R laser/R/rhoFxn.BOTHVAR.R laser/R/yuleWindow.R laser/R/truncateTree.R laser/R/node.sons.R laser/R/pTt.SPVAR.R laser/R/checkbasal.R laser/R/fitdAICrc.R laser/R/yuleint2.R
laser/MD5
laser/DESCRIPTION
laser/man
laser/man/plethodon.Rd laser/man/laser-package.Rd laser/man/yule-n-rate.Rd laser/man/fitdAICrc.Rd laser/man/getBtimes.Rd laser/man/birthdeathSim.Rd laser/man/yuleSim.Rd laser/man/plotRate.Rd laser/man/fitContinuousBirthDeath.Rd laser/man/bd.Rd laser/man/DensityDependent.Rd laser/man/mccrTest.Rd laser/man/warblers.Rd laser/man/pureBirth.Rd laser/man/laser-internals.Rd laser/man/fitdAICrc.batch.Rd laser/man/RandomTrees.Rd laser/man/agamids.Rd laser/man/calcLHbd.Rd laser/man/plotLtt.Rd laser/man/magsand.Rd laser/man/truncateTree.Rd laser/man/plotNodeNumbers.phylo.Rd laser/man/yuleWindow.Rd laser/man/scaleBranchingtimes.Rd laser/man/gamStat.Rd laser/man/getBtimes.batch.Rd

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