agamids: Ultrametric Phylogeny of Australian Agamid Lizards

In laser: Likelihood Analysis of Speciation/Extinction Rates from Phylogenies

Description

Ultrametric phylogenetic tree for 69 Australian Agamid lizards. Tree was constructed by maximum likelihood from 1800 bp of mtDNA using the GTR + I + G model of sequence evolution and made ultrametric using Non-Parametric Rate Smoothing.

Usage

data(agamids)

Source

Harmon, L. J., J. A. Schulte, A. Larson, and J. B. Losos. 2003. Tempo and mode of evolutionary radiation in Iguanian lizards. Science 301:961-964.

References

Rabosky, D. L. 2006. Likelihood methods for inferring temporal shifts in diversification rates. Evolution 60:1152-1164.

Examples

data(agamids)
agbtimes <- getBtimes(string = agamids)
gamStat(agbtimes)
plotLtt(agbtimes)

laser documentation built on Jan. 15, 2017, 4:49 p.m.