Man pages for laser
Likelihood Analysis of Speciation/Extinction Rates from Phylogenies
| agamids | Ultrametric Phylogeny of Australian Agamid Lizards |
| bd | Fit Rate-Constant Birth-Death Model to Branching Times |
| birthdeathSim | birthdeathSim |
| calcLHbd | Calculate Likelihood of Branching Times Under Birth-Death... |
| DensityDependent | Fit Density Dependent Speciation Model to Branching Times |
| fitContinuousBirthDeath | Fit model with continuous-time varying speciation/extinction... |
| fitdAICrc | Test for Rate Variation Using delta-AICrc Test Statistic |
| fitdAICrc.batch | Generate Null Distribution of dAICrc |
| gamStat | gamStat |
| getBtimes | Get Branching Times From Parenthetic-Format Tree ('Newick') |
| getBtimes.batch | Branching Times for Batch of Phylogenies |
| laser-internals | internal functions for package laser |
| laser-package | LASER |
| magsand | Estimate speciation rates for crown and stem groups |
| mccrTest | Conduct monte carlo constant rates (gamma statistic) test |
| plethodon | plethodon |
| plotLtt | plotLtt |
| plotNodeNumbers.phylo | Plot phylogenetic tree with node numbers |
| plotRate | Plot speciation and extinction rates through time |
| pureBirth | pureBirth |
| RandomTrees | Random Phylogenetic Trees |
| scaleBranchingtimes | Scale Branching Times |
| truncateTree | Truncate a Set of Branching Times |
| warblers | Branching times from phylogeny of North American Dendroica... |
| yule-n-rate | yule-n-rate |
| yuleSim | yuleSim |
| yuleWindow | Fit Yule Model (Pure Birth) to Temporal Window of Branching... |
