example.data: Genetic and phenotypic data for Arabidopsis thaliana

In lfmm: Latent Factor Mixed Models

Description

A dataset containing SNP frequency and simulated phenotypic data for 170 plant accessions. The variables are as follows:

Usage

data(example.data)

Format

A list with 4 arguments: genotype, phenotype, causal.set, chrpos

Details

• genotype: binary (0 or 1) SNP frequency for 170 individuals (26943 SNPs).

• phenotype: simulated phenotypic data for 170 individuals.

• causal.set: set of indices for causal SNPs.

• chrpos: genetic map including chromosome position of each SNP.

Reference: Atwell et al (2010). Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465, 627–631.

lfmm documentation built on June 30, 2021, 5:07 p.m.