skin.exposure: Simulated (and real) methylation levels for sun exposed...
In lfmm: Latent Factor Mixed Models

A data set containing normalized beta values, and sun exposure and simulated phenotypic data for 78 tissue samples.

1	data("skin.exposure")

A list with 6 arguments: beta.value, phenotype, causal.set, chrpos

The variables are:

beta.value: 1496 filtered normalized beta values (methyation probabilities) for 78 tissue samples.
exposure: Sun exposure levels for 78 tissue samples.
phenotype: Simulated binary phenotypic data for 78 tissue samples.
age: age of patients.
gender: sex of patients.
tissue: category for tissue samples.

Reference: Vandiver et al (2015). Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin. Genome Biol. 16.

lfmm documentation built on June 30, 2021, 5:07 p.m.