Man pages for lgcp
Log-Gaussian Cox Process

add.listadd.list function
addTemporalCovariatesaddTemporalCovariates function
affine.fromFunctionaffine.fromFunction function
affine.fromSPDFaffine.fromSPDF function
affine.fromXYZaffine.fromXYZ function
affine.SpatialPolygonsDataFrameaffine.SpatialPolygonsDataFrame function
affine.stpppaffine.stppp function
aggCovInfoaggCovInfo function
aggCovInfo.ArealWeightedMeanaggCovInfo.ArealWeightedMean function
aggCovInfo.ArealWeightedSumaggCovInfo.ArealWeightedSum function
aggCovInfo.MajorityaggCovInfo.Majority function
aggregateCovariateInfoaggregateCovariateInfo function
aggregateformulaListaggregateformulaList function
andrieuthomshandrieuthomsh function
as.array.lgcpgridas.array.lgcpgrid function
as.fromXYZas.fromXYZ function
as.fromXYZ.fromFunctionas.fromXYZ.fromFunction function
as.im.fromFunctionas.im.fromFunction function
as.im.fromSPDFas.im.fromSPDF function
as.im.fromXYZas.im.fromXYZ function
as.list.lgcpgridas.list.lgcpgrid function
as.owinlistas.owinlist function
as.owinlist.SpatialPolygonsDataFrameas.owinlist.SpatialPolygonsDataFrame function
as.owinlist.stappas.owinlist.stapp function
as.owin.stappas.owin.stapp function
as.ppp.mstpppas.ppp.mstppp function
as.ppp.stpppas.ppp.stppp function
assigninterpassigninterp function
as.SpatialGridDataFrameas.SpatialGridDataFrame function
as.SpatialGridDataFrame.fromXYZas.SpatialGridDataFrame.fromXYZ function
as.SpatialPixelsDataFrameas.SpatialPixelsDataFrame function
as.SpatialPixelsDataFrame.lgcpgridas.SpatialPixelsDataFrame.lgcpgrid function
as.stpppas.stppp function
as.stppp.stappas.stppp.stapp function
atat function
autocorrautocorr function
autocorrMultitypeautocorrMultitype function
BetaParametersBetaParameters function
betavalsbetavals function
blockcircbaseblockcircbase function
blockcircbaseFunctionblockcircbaseFunction function
bt.scalarbt.scalar function
C.diff.single.imC.diff.single.im function
checkObsWincheckObsWin function
chooseCellwidthchooseCellwidth function
circulantcirculant function
circulant.matrixcirculant.matrix function
circulant.numericcirculant.numeric function
clearinterpclearinterp function
computeGradtruncSpatialcomputeGradtruncSpatial function
computeGradtruncSpatioTemporalcomputeGradtruncSpatioTemporal function
condProbscondProbs function
constanthconstanth function
constantInTimeconstantInTime function
constantInTime.numericconstantInTime.numeric function
constantInTime.stpppconstantInTime.stppp function
covEffectscovEffects function
CovFunctionCovFunction function
CovFunction.functionCovFunction.function function
cov.interp.fftcov.interp.fft function
CovParametersCovParameters function
CvbCvb function
density.stpppdensity.stppp function
d.funcd.func function
discreteWindowdiscreteWindow function
discreteWindow.lgcpPredictdiscreteWindow.lgcpPredict function
dump2dirdump2dir function
eigenfrombaseeigenfrombase function
etavalsetavals function
EvaluatePriorEvaluatePrior function
exceedProbsexceedProbs function
exceedProbsAggregatedexceedProbsAggregated function
expectationexpectation function
expectation.lgcpPredictexpectation.lgcpPredict function
expectation.lgcpPredictSpatialOnlyPlusParametersexpectation.lgcpPredictSpatialOnlyPlusParameters function
exponentialCovFctexponentialCovFct function
extendspatialAtRiskextendspatialAtRisk function
extractextract function
extract.lgcpPredictextract.lgcpPredict function
Extract.mstpppExtract.mstppp function
Extract.stpppExtract.stppp function
fftgridfftgrid function
fftinterpolatefftinterpolate function
fftinterpolate.fromFunctionfftinterpolate.fromFunction function
fftinterpolate.fromSPDFfftinterpolate.fromSPDF function
fftinterpolate.fromXYZinterpolate.fromXYZ function
fftmultiplyfftmultiply function
formulaListformulaList function
GAfinaliseGAfinalise function
GAfinalise.MonteCarloAverageGAfinalise.MonteCarloAverage function
GAfinalise.nullAverageGAfinalise.nullAverage function
GAinitialiseGAinitialise function
GAinitialise.MonteCarloAverageGAinitialise.MonteCarloAverage function
GAinitialise.nullAverageGAinitialise.nullAverage function
GammafromYGammafromY function
GAreturnvalueGAreturnvalue function
GAreturnvalue.MonteCarloAverageGAreturnvalue.MonteCarloAverage function
GAreturnvalue.nullAverageGAreturnvalue.nullAverage function##'
GAupdateGAupdate function
GAupdate.MonteCarloAverageGAupdate.MonteCarloAverage function
GAupdate.nullAverageGAupdate.nullAverage function
GaussianPriorGaussianPrior function
g.diff.singleg.diff.single function
genFFTgridgenFFTgrid function
getCellCountsgetCellCounts function
getCountsgetCounts function
getCovParametersgetCovParameters function
getCovParameters.GPrealisationgetCovParameters.GPrealisation function
getCovParameters.listgetCovParameters.list function
getinterpgetinterp function
getlgcpPredictSpatialINLAgetlgcpPredictSpatialINLA function
getLHSformulaListgetLHSformulaList function
getpolyolgetpolyol function
getRotationgetRotation function
getRotation.defaultgetRotation.default function
getRotation.stpppgetRotation.stppp function
getupgetup function
getZmatgetZmat function
getZmatsgetZmats function
GFfinaliseGFfinalise function
GFfinalise.dump2dirGFfinalise.dump2dir function
GFfinalise.nullFunctionGFfinalise.nullFunction function
GFinitialiseGFinitialise function
GFinitialise.dump2dirGFinitialise.dump2dir function
GFinitialise.nullFunctionGFinitialise.nullFunction function
GFreturnvalueGFreturnvalue function
GFreturnvalue.dump2dirGFreturnvalue.dump2dir function
GFreturnvalue.nullFunctionGFreturnvalue.nullFunction function
GFupdateGFupdate function
GFupdate.dump2dirGFupdate.dump2dir function
GFupdate.nullFunctionGFupdate.nullFunction function
ginhomAverageginhomAverage function
gOverlaygOverlay function
GPdrvGPdrv function
GPdrv2GPdrv2 function
GPdrv2_MultitypeGPdrv2_Multitype function
GPlist2arrayGPlist2array function
GPrealisationGPrealisation function
grid2spdfgrid2spdf function
grid2spixgrid2spix function
grid2spolygrid2spoly function
grid2sptsgrid2spts function
gridavgridav function
gridav.lgcpPredictgridav.lgcpPredict function
gridfungridfun function
gridfun.lgcpPredictgridfun.lgcpPredict function
gridInWindowgridInWindow function
gugu function
guessinterpguessinterp function
hasNextgeneric hasNext method
hasNext.iterhasNext.iter function
hvalshvals function
hvals.lgcpPredicthvals.lgcpPredict function
identifygrididentifygrid function
identify.lgcpPredictidentify.lgcpPredict function
image.lgcpgridimage.lgcpgrid function
initialiseAMCMCinitialiseAMCMC function
initialiseAMCMC.andrieuthomshinitaliseAMCMC.andrieuthomsh function
initialiseAMCMC.constanthinitaliseAMCMC.constanth function
integeriseintegerise function
integerise.mstpppintegerise.mstppp function
integerise.stpppintegerise.stppp function
intensintens function
intens.lgcpPredictintens.lgcpPredict function
intens.lgcpSimMultitypeSpatialPlusParametersintens.lgcpSimMultitypeSpatialPlusParameters function
intens.lgcpSimSpatialPlusParametersintens.lgcpSimSpatialPlusParameters function
interptypesinterptypes function
inversebaseinversebase function
is.burninis this a burn-in iteration?
is.pow2is.pow2 function
is.retaindo we retain this iteration?
is.SPDis.SPD function
iterationiteration number
K.diff.singleK.diff.single function
KinhomAverageKinhomAverage function
K.uK.u function
K.valK.val function
lambdaEstlambdaEst function
lambdaEst.ppplambdaEst.ppp function
lambdaEst.stppplambdaEst.stppp function
lgcpbayeslgcpbayes function
lgcpForecastlgcpForecast function
lgcpgridlgcpgrid function
lgcpgrid.arraylgcpgrid.array function
lgcpgrid.listlgcpgrid.list function
lgcpgrid.matrixlgcpgrid.matrix function
lgcpInitslgcpInits function
lgcp-packagelgcp
lgcpparslgcppars function
lgcpPredictlgcpPredict function
lgcpPredictAggregatedlgcpPredictAggregated function
lgcpPredictAggregateSpatialPlusParslgcpPredictAggregateSpatialPlusPars function
lgcpPredictMultitypeSpatialPlusParslgcpPredictMultitypeSpatialPlusPars function
lgcpPredictSpatiallgcpPredictSpatial function
lgcpPredictSpatialINLAlgcpPredictSpatialINLA function
lgcpPredictSpatialPlusParslgcpPredictSpatialPlusPars function
lgcpPredictSpatioTemporalPlusParslgcpPredictSpatioTemporalPlusPars function
lgcpPriorlgcpPrior function
lgcpSimlgcpSim function
lgcpSimMultitypeSpatialCovariateslgcpSimMultitypeSpatialCovariates function
lgcpSimSpatiallgcpSimSpatial function
lgcpSimSpatialCovariateslgcpSimSpatialCovariates function
lgcpvignettelgcpvignette function
loc2polyloc2poly function
LogGaussianPriorLogGaussianPrior function
loop.mcmcloop over an iterator
ltarltar function
MALAlgcpMALAlgcp function
MALAlgcpAggregateSpatial.PlusParsMALAlgcpAggregateSpatial.PlusPars function
MALAlgcpMultitypeSpatial.PlusParsMALAlgcpMultitypeSpatial.PlusPars function
MALAlgcpSpatialMALAlgcpSpatial function
MALAlgcpSpatial.PlusParsMALAlgcpSpatial.PlusPars function
MALAlgcpSpatioTemporal.PlusParsMALAlgcpSpatioTemporal.PlusPars function
matchcovariancematchcovariance function
maternCovFct15maternCovFct15 function
maternCovFct25maternCovFct25 function
mcmcLoopiterator for MCMC loops
mcmcparsmcmcpars function
mcmcProgressNonenull progress monitor
mcmcProgressPrintprinting progress monitor
mcmcProgressTextBartext bar progress monitor
mcmcProgressTkgraphical progress monitor
mcmctracemcmctrace function
mcmctrace.lgcpPredictmcmctrace.lgcpPredict function
meanfieldmeanfield function
meanfield.lgcpPredictmeanfield.lgcpPredict function
meanfield.lgcpPredictINLAmeanfield.lgcpPredictINLA function
minimum.contrastminimum.contrast function
minimum.contrast.spatiotemporalminimum.contrast.spatiotemporal function
MonteCarloAverageMonteCarloAverage function
mstpppmstppp function
mstppp.listmstppp.list function
mstppp.pppmstppp.ppp function
mstppp.stpppmstppp.stppp function
muEstmuEst function
multiply.listmultiply.list function
my.ginhomAveragemy.ginhomAverage function
my.KinhomAveragemy.KinhomAverage function
neattableneattable function
neigh2Dneigh2D function
nextStepnext step of an MCMC chain
nullAveragenullAverage function
nullFunctionnullFunction function
numCasesnumCases function
osppp2latlonosppp2latlon function
osppp2mercosppp2merc function
paramprecparamprec function
paramprecbaseparamprecbase function
parautocorrparautocorr function
parsummaryparsummary function
plotExceedplotExceed function
plotExceed.arrayplotExceed.array function
plotExceed.lgcpPredictplotExceed.lgcpPredict function
plot.fromSPDFplot.fromSPDF function
plot.fromXYZplot.fromXYZ function
plotitplotit function
plot.lgcpAutocorrplot.lgcpAutocorr function
plot.lgcpgridplot.lgcpgrid function
plot.lgcpPredictplot.lgcpPredict function
plot.lgcpQuantilesplot.lgcpQuantiles function
plot.lgcpZmatplot.lgcpZmat function
plot.mcmcdiagplot.mcmcdiag function
plot.mstpppplot.mstppp function
plot.stpppplot.stppp function
plot.temporalAtRiskplot.temporalAtRisk function
postcovpostcov function
postcov.lgcpPredictAggregateSpatialPlusParameterspostcov.lgcpPredictAggregateSpatialPlusParameters function
postcov.lgcpPredictMultitypeSpatialPlusParameterspostcov.lgcpPredictMultitypeSpatialPlusParameters function
postcov.lgcpPredictSpatialOnlyPlusParameterspostcov.lgcpPredictSpatialOnlyPlusParameters function
postcov.lgcpPredictSpatioTemporalPlusParameterspostcov.lgcpPredictSpatioTemporalPlusParameters function
print.dump2dirprint.dump2dir function
print.fromFunctionprint.fromFunction function
print.fromSPDFprint.fromSPDF function
print.fromXYZprint.fromXYZ function
print.gridaverageprint.gridaverage function
print.lgcpgridprint.lgcpgrid function
print.lgcpPredictprint.lgcpPredict function
print.mcmcprint.mcmc function
print.mstpppprint.mstppp function
print.stappprint.stapp function
print.stpppprint.stppp function
print.temporalAtRiskprint.temporalAtRisk function
priorpostpriorpost function
PriorSpecPriorSpec function
PriorSpec.listPriorSpec.list function
quantile.lgcpgridquantile.lgcpgrid function
quantile.lgcpPredictquantile.lgcpPredict function
RandomFieldsCovFctRandomFieldsCovFct function
raster.lgcpgridraster.lgcpgrid function
rescale.mstppprescale.mstppp function
rescale.stppprescale.stppp function
resetLoopreset iterator
rgaussrgauss function
roteffgainroteffgain function
rotmatrotmat function
rrrr function
rr.lgcpPredictrr.lgcpPredict function
samplePosteriorsamplePosterior function
segProbssegProbs function
seintensseintens function
seintens.lgcpPredictseintens.lgcpPredict function
selectObsWindowselectObsWindow function
selectObsWindow.defaultselectObsWindow.default function
selectObsWindow.stpppselectObsWindow.stppp function
serrserr function
serr.lgcpPredictserr.lgcpPredict function
setoutputsetoutput function
setTxtProgressBar2set the progress bar
showGridshowGrid function
showGrid.defaultshowGrid.default function
showGrid.lgcpPredictshowGrid.lgcpPredict function
showGrid.stpppshowGrid.stppp function
smultiply.listsmultiply.list function
sparsebasesparsebase function
spatialAtRiskspatialAtRisk function
spatialAtRisk.bivdenspatialAtRisk.bivden function
spatialAtRisk.defaultspatialAtRisk.default function
spatialAtRisk.fromXYZspatialAtRisk.fromXYZ function
spatialAtRisk.functionspatialAtRisk.function function
spatialAtRisk.imspatialAtRisk.im function
spatialAtRisk.lgcpgridspatialAtRisk.lgcpgrid function
spatialAtRisk.SpatialGridDataFramespatialAtRisk.SpatialGridDataFrame function
spatialAtRisk.SpatialPolygonsDataFramespatialAtRisk.SpatialPolygonsDataFrame function
spatialIntensitiesspatialIntensities function
spatialIntensities.fromSPDFspatialIntensities.fromSPDF function
spatialIntensities.fromXYZspatialIntensities.fromXYZ function
spatialparsEstspatialparsEst function
SpatialPolygonsDataFrame.stappSpatialPolygonsDataFrame.stapp function
SpikedExponentialCovFctSpikedExponentialCovFct function
stappstapp function
stapp.liststapp.list function
stapp.SpatialPolygonsDataFramestapp.SpatialPolygonsDataFrame function
stGPrealisationstGPrealisation function
stpppstppp function
stppp.liststppp.list function
stppp.pppstppp.ppp function
summary.lgcpgridsummary.lgcpgrid function
summary.mcmcsummary.mcmc function
target.and.grad.AggregateSpatialPlusParstarget.and.grad.AggregateSpatialPlusPars function
target.and.grad.MultitypespatialPlusParstarget.and.grad.MultitypespatialPlusPars function
target.and.grad.spatialtarget.and.grad.spatial function
target.and.grad.spatialPlusParstarget.and.grad.spatialPlusPars function
target.and.grad.spatiotemporaltarget.and.grad.spatiotemporal function
target.and.grad.SpatioTemporalPlusParstarget.and.grad.SpatioTemporalPlusPars function
temporalAtRisktemporalAtRisk function
temporalAtRisk.functiontemporalAtRisk.function function
temporalAtRisk.numerictemporalAtRisk.numeric function
tempRastertempRaster function
textsummarytextsummary function
thetaEstthetaEst function
toral.cov.mattoral.cov.mat function
touchingowintouchingowin function
traceplotstraceplots function
transblacktransblack function
transbluetransblue function
transgreentransgreen function
transredtransred function
txtProgressBar2A text progress bar with label
updateAMCMCupdateAMCMC function
updateAMCMC.andrieuthomshupdateAMCMC.andrieuthomsh function
updateAMCMC.constanthupdateAMCMC.constanth function
varfieldvarfield function
varfield.lgcpPredictvarfield.lgcpPredict function
varfield.lgcpPredictINLAvarfield.lgcpPredictINLA function
window.lgcpPredictwindow.lgcpPredict function
wpopdataPopulation of Welsh counties
wtowncoordsWelsh town details: location
wtownsWelsh town details: population
xvalsxvals function
xvals.defaultxvals.default function
xvals.fromXYZxvals.fromXYZ function
xvals.lgcpPredictxvals.lgcpPredict function
xvals.SpatialGridDataFramexvals.SpatialGridDataFrame function
YfromGammaYfromGamma function
yvalsyvals function
yvals.defaultyvals.default function
yvals.fromXYZyvals.fromXYZ function
yvals.lgcpPredictyvals.lgcpPredict function
yvals.SpatialGridDataFrameyvals.SpatialGridDataFrame function
zvalszvals function
zvals.defaultzvals.default function
zvals.fromXYZzvals.fromXYZ function
zvals.SpatialGridDataFramezvals.SpatialGridDataFrame function
lgcp documentation built on May 22, 2018, 5:05 p.m.