MALAlgcpMultitypeSpatial.PlusPars: MALAlgcpMultitypeSpatial.PlusPars function

In lgcp: Log-Gaussian Cox Process

MALAlgcpMultitypeSpatial.PlusPars function

Description

A function to run the MCMC algorithm for multivariate spatial point process data. Not for general purpose use.

Usage

MALAlgcpMultitypeSpatial.PlusPars(
  mcmcloop,
  inits,
  adaptivescheme,
  M,
  N,
  Mext,
  Next,
  mcens,
  ncens,
  formulaList,
  zml,
  Zmat,
  model.priorsList,
  model.initsList,
  fftgrid,
  spatial.covmodelList,
  nis,
  cellarea,
  spatialvals,
  cellInside,
  MCMCdiag,
  gradtrunc,
  gridfun,
  gridav,
  marks,
  ntypes,
  d
)

Arguments

mcmcloop	details of the mcmc loop
inits	initial values
adaptivescheme	the adaptive MCMC scheme
M	number of grid cells in x direction
N	number of grid cells in y direction
Mext	number of extended grid cells in x direction
Next	number of extended grid cells in y direction
mcens	centroids in x direction
ncens	centroids in y direction
formulaList	a list of formula objects of the form X ~ var1 + var2 etc.
zml	list of design matrices
Zmat	a design matrix constructed using getZmat
model.priorsList	list of model priors, see lgcpPriors
model.initsList	list of model initial values, see lgcpInits
fftgrid	an objects of class FFTgrid, see genFFTgrid
spatial.covmodelList	list of spatial covariance models constructed using CovFunction
nis	cell counts on the etended grid
cellarea	the cell area
spatialvals	inerpolated poisson offset on fft grid
cellInside	0-1 matrix indicating inclusion in the observation window
MCMCdiag	not used
gradtrunc	gradient truncation parameter
gridfun	used to specify other actions to be taken, e.g. dumping MCMC output to disk.
gridav	used for computing Monte Carlo expectations online
marks	the marks from the marked ppp object
ntypes	the number of types being analysed
d	matrix of toral distances

Value

output from the MCMC run

lgcp documentation built on Oct. 3, 2023, 5:08 p.m.