liayson: Linking Singe-Cell Transcriptomes Atween Contemporary Subpopulation Genomes

Given an RNA-seq derived cell-by-gene matrix and an DNA-seq derived copy number segmentation, LIAYSON predicts the number of clones present in a tumor, their size, the copy number profile of each clone and the clone membership of each single cell (Andor, N. & Lau, B., et al. (2018) <doi:10.1101/445932>).

Getting started

Package details

AuthorNoemi Andor
MaintainerNoemi Andor <liayson.scRNA.R@gmail.com>
LicenseGPL-2
Version1.0.4
URL https://github.com/noemiandor/liayson https://groups.google.com/d/forum/liayson
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("liayson")

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liayson documentation built on June 21, 2021, 9:06 a.m.