likeLTD: Tools to Evaluate DNA Profile Evidence

Tools to determine DNA profile Weight of Evidence. For further information see the 'likeLTD' guide provided, or Balding, D.J. (2013) <DOI:10.1073/pnas.1219739110>.

Author
David Balding, Adrian Timpson, Christopher Steele, Mayeul d'Avezac, James Hetherington.
Date of publication
2016-10-24 23:27:19
Maintainer
Christopher Steele <c.steele.11@ucl.ac.uk>
License
GPL-3
Version
6.1.1
URLs

View on CRAN

Man pages

allele.report
likeLTD::allele.report
allele.report.peaks
likeLTD::allele.report.peaks
compatible.genotypes
likeLTD::compatible.genotypes
create.likelihood
likeLTD::create.likelihood
create.likelihood.log
likeLTD::create.likelihood.log
create.likelihood.vectors
likeLTD::create.likelihood.vectors
create.likelihood.vectors.peaks
likeLTD::create.likelihood.vectors.peaks
CSP.heights.plot
likeLTD::CSP.heights.plot
defence.hypothesis
likeLTD::defence.hypothesis
defence.hypothesis.peaks
likeLTD::defence.hypothesis.peaks
DEoptimLoop
likeLTD::DEoptimLoop
determine.dropout
determine.dropout
DNA17-db
NGMSelect allele database
evaluate
likeLTD::evaluate
evaluate.from.interim
likeLTD::evaluate.from.interim
evaluate.from.interim.peaks
likeLTD::evaluate.from.interim.peaks
evaluate.peaks
likeLTD::evaluate.peaks
get.likely.genotypes
likeLTD::get.likely.genotypes
get.likely.genotypes.peaks
likeLTD::get.likely.genotypes.peaks
Identifiler-db
Identifiler allele database
initial.arguments
likeLTD::initial.arguments
lgc-allele-freqs-wbp
Allele database
likeLTD
likeLTD
linkage
Recombination rates for linked loci
load.allele.database
likeLTD::load.allele.database
locus.likes
likeLTD::locus.likes
locus.likes.peaks
likeLTD::locus.likes.peaks
objective.functions
likeLTD objective functions
optimisation.params
likeLTD::optimisation.params
optimisation.params.peaks
likeLTD::optimisation.params.peaks
output.report
likeLTD::output.report
output.report.peaks
likeLTD::output.report.peaks
pack.admin.input
likeLTD::pack.admin.input
pack.admin.input.peaks
likeLTD::pack.admin.input.peaks
peaks.results.plot
likeLTD::peaks.results.plot
penalties
likeLTD::penalties
plotLikelihood.2d
likeLTD::plotLikelihood.2d
prosecution.hypothesis
likeLTD::prosecution.hypothesis
prosecution.hypothesis.peaks
likeLTD::prosecution.hypothesis.peaks
read.csp.profile
likeLTD::read.csp.profile
read.known.profiles
likeLTD::read.known.profiles
read.peaks.profile
likeLTD::read.peaks.profile
read.unc.profile
likeLTD::read.unc.profile
relistArguments
likeLTD::relistArguments
relistArguments.peaks
likeLTD::relistArguments.peaks
SGMplus-db
SGMplus allele database
unitTests.likeLTD
Unit tests for the package likeLTD

Files in this package

likeLTD
likeLTD/inst
likeLTD/inst/CITATION
likeLTD/inst/extdata
likeLTD/inst/extdata/nodropout
likeLTD/inst/extdata/nodropout/CSP.csv
likeLTD/inst/extdata/nodropout/reference.csv
likeLTD/inst/extdata/nodropin
likeLTD/inst/extdata/nodropin/hammer-reference.csv
likeLTD/inst/extdata/nodropin/hammer-CSP.csv
likeLTD/inst/extdata/novictim
likeLTD/inst/extdata/novictim/hammer-reference.csv
likeLTD/inst/extdata/novictim/hammer-CSP.csv
likeLTD/inst/extdata/laboratory
likeLTD/inst/extdata/laboratory/laboratory-CSP-discrete.csv
likeLTD/inst/extdata/laboratory/laboratory-CSP.csv
likeLTD/inst/extdata/laboratory/laboratory-reference.csv
likeLTD/inst/extdata/hammer
likeLTD/inst/extdata/hammer/hammer-reference.csv
likeLTD/inst/extdata/hammer/hammer-CSP.csv
likeLTD/inst/extdata/hammer/space-CSP.csv
likeLTD/inst/extdata/hammer/space-reference.csv
likeLTD/inst/doc
likeLTD/inst/doc/likeLTDguide.pdf
likeLTD/inst/doc/usage.Rnw
likeLTD/inst/doc/usage.R
likeLTD/inst/doc/usage.pdf
likeLTD/inst/unitTests
likeLTD/inst/unitTests/runit_nodropin.R
likeLTD/inst/unitTests/runit_nodropout.R
likeLTD/inst/unitTests/runit_maximize.R
likeLTD/inst/unitTests/runit_reports.R
likeLTD/inst/unitTests/runit_novictims.R
likeLTD/inst/unitTests/runit_hypothesis.R
likeLTD/inst/unitTests/runit_objective.R
likeLTD/inst/unitTests/runit_objectivePerLocus.R
likeLTD/inst/unitTests/runit_genetics.R
likeLTD/src
likeLTD/src/Makevars
likeLTD/src/genetics.h
likeLTD/src/maximizePeaks.cpp
likeLTD/src/objectives.cpp
likeLTD/src/openmp.h
likeLTD/src/objectives.h
likeLTD/src/config.h
likeLTD/src/genetics.cpp
likeLTD/src/gammaDist.cpp
likeLTD/src/gammaDist.h
likeLTD/src/module.cpp
likeLTD/src/openmp.cpp
likeLTD/src/Makevars.win
likeLTD/src/maximizePeaks.h
likeLTD/NAMESPACE
likeLTD/demo
likeLTD/demo/hammer.R
likeLTD/demo/allele_report.R
likeLTD/demo/plotter.R
likeLTD/demo/00Index
likeLTD/demo/timings.R
likeLTD/data
likeLTD/data/Identifiler-db.txt.gz
likeLTD/data/DNA17-db.txt.gz
likeLTD/data/SGMplus-db.txt.gz
likeLTD/data/linkage.txt.gz
likeLTD/data/lgc-allele-freqs-wbp.txt.gz
likeLTD/R
likeLTD/R/objectives-peaks.R
likeLTD/R/reports-peaks.R
likeLTD/R/maximize.R
likeLTD/R/plotter.R
likeLTD/R/maximize-peaks.R
likeLTD/R/genetics.R
likeLTD/R/genetics-peaks.R
likeLTD/R/hypothesis-peaks.R
likeLTD/R/reports.R
likeLTD/R/hypothesis.R
likeLTD/R/kMeans.R
likeLTD/R/objectives.R
likeLTD/vignettes
likeLTD/vignettes/usage.Rnw
likeLTD/MD5
likeLTD/build
likeLTD/build/vignette.rds
likeLTD/DESCRIPTION
likeLTD/man
likeLTD/man/Identifiler-db.Rd
likeLTD/man/create.likelihood.log.Rd
likeLTD/man/initial.arguments.Rd
likeLTD/man/read.unc.profile.Rd
likeLTD/man/locus.likes.Rd
likeLTD/man/optimisation.params.peaks.Rd
likeLTD/man/optimisation.params.Rd
likeLTD/man/get.likely.genotypes.Rd
likeLTD/man/create.likelihood.Rd
likeLTD/man/determine.dropout.Rd
likeLTD/man/linkage.Rd
likeLTD/man/peaks.results.plot.Rd
likeLTD/man/penalties.Rd
likeLTD/man/evaluate.peaks.Rd
likeLTD/man/allele.report.Rd
likeLTD/man/relistArguments.peaks.Rd
likeLTD/man/objective.functions.Rd
likeLTD/man/read.peaks.profile.Rd
likeLTD/man/defence.hypothesis.Rd
likeLTD/man/evaluate.Rd
likeLTD/man/DNA17-db.Rd
likeLTD/man/evaluate.from.interim.Rd
likeLTD/man/defence.hypothesis.peaks.Rd
likeLTD/man/locus.likes.peaks.Rd
likeLTD/man/unitTests.likeLTD.Rd
likeLTD/man/load.allele.database.Rd
likeLTD/man/create.likelihood.vectors.peaks.Rd
likeLTD/man/output.report.Rd
likeLTD/man/DEoptimLoop.Rd
likeLTD/man/SGMplus-db.Rd
likeLTD/man/get.likely.genotypes.peaks.Rd
likeLTD/man/prosecution.hypothesis.peaks.Rd
likeLTD/man/relistArguments.Rd
likeLTD/man/output.report.peaks.Rd
likeLTD/man/create.likelihood.vectors.Rd
likeLTD/man/allele.report.peaks.Rd
likeLTD/man/read.known.profiles.Rd
likeLTD/man/likeLTD.Rd
likeLTD/man/plotLikelihood.2d.Rd
likeLTD/man/pack.admin.input.peaks.Rd
likeLTD/man/CSP.heights.plot.Rd
likeLTD/man/read.csp.profile.Rd
likeLTD/man/compatible.genotypes.Rd
likeLTD/man/evaluate.from.interim.peaks.Rd
likeLTD/man/lgc-allele-freqs-wbp.Rd
likeLTD/man/pack.admin.input.Rd
likeLTD/man/prosecution.hypothesis.Rd