API for likeLTD
Tools to Evaluate DNA Profile Evidence

Global functions
CSP.heights.plot Man page Source code
DEoptimLoop Man page Source code
DNA17-db Man page
DNAcontDeg Source code
Identifiler-db Man page
SGMplus-db Man page
Zcousin Source code
Zgrandparent Source code
Zhsibs Source code
Zhuncle Source code
Zsib Source code
Zuncle Source code
add.args.to.hypothesis Source code
add.stutter.index Source code
adjust.frequencies Source code
agnostic.hypothesis Source code
agnostic.hypothesis.peaks Source code
all.epg.per.locus Source code
all.genotypes.per.locus Source code
all.genotypes.per.locus.R Source code
allExplained Source code
allele.report Man page Source code
allele.report.peaks Man page Source code
alterDBvals Source code
alterHypothesis Source code
calc.dropout Source code
callLocusPeaks Source code
callReplicatePeaks Source code
checkConverged Source code
checkData1 Source code
checkData2 Source code
checkDropin Source code
checkStutter Source code
chosen.parameter.table.reformatter Source code
chosen.parameter.table.reformatter.peaks Source code
combine.rares Source code
combine.rares.locus Source code
combine.rares.locus.peaks Source code
combine.rares.peaks Source code
combineStutter Source code
common.report.section Source code
common.report.section.peaks Source code
compare.hypothesis.inputs Source code
compatible.genotypes Man page Source code
convert.to.binary Source code
convertRelationship Source code
create.contributor.table Source code
create.hypothesis.string.peaks Source code
create.likelihood Man page Source code
create.likelihood.log Man page Source code
create.likelihood.per.locus Source code
create.likelihood.per.locus.peaks Source code
create.likelihood.vectors Man page Source code
create.likelihood.vectors.peaks Man page Source code
csp.table.reformatter Source code
csp.table.to.latex Source code
defence.hypothesis Man page Source code
defence.hypothesis.peaks Man page Source code
determine.dropout Man page Source code
dropDeg Source code
empty.alleles Source code
estimate.csp Source code
estimates Source code
estimates.reformatter Source code
ethnic.database Source code
ethnic.database.lus Source code
evaluate Man page Source code
evaluate.from.interim Man page Source code
evaluate.from.interim.peaks Man page Source code
evaluate.peaks Man page Source code
explain.all.peaks Source code
extrapolateBP Source code
extrapolateLUS Source code
file.inputs.table.reformatter Source code
file.inputs.table.reformatter.peaks Source code
filename.maker Source code
fill.unknown.LUS Source code
filter.below.thresh.peaks Source code
filterCertains Source code
formatAllele Source code
formatRef Source code
genotype.factors Source code
geometric.series Source code
get.database.values Source code
get.likely.genotypes Man page Source code
get.likely.genotypes.peaks Man page Source code
get.representation.rfu Source code
getDNAcontDeg Source code
getHeightsQ Source code
getHeightsUnattrib Source code
getLocusCertains Source code
getMatchProb Source code
getMatching Source code
getMaxAF Source code
getPeakContributors Source code
getQpeaks Source code
getReplicateCertains Source code
getSteps Source code
het Source code
hetAllele Source code
hetLinked Source code
hom Source code
homAllele Source code
homLinked Source code
hyp.D Source code
hyp.P Source code
hypothesis.generator Source code
hypothesis.generator.peaks Source code
ideal Source code
inRange Source code
initial.arguments Man page Source code
initial.arguments.peaks Source code
interim Source code
isSingleRefReplicatedAll Source code
isSingleRefReplicatedCertain Source code
kmeansIt Source code
kmeanslocus Source code
known.epg.per.locus Source code
latex.maker Source code
latex.table.footer Source code
latex.table.header Source code
lgc-allele-freqs-wbp Man page
likeLTD Man page
likelihood.constructs.per.locus Source code
likelihood.constructs.per.locus.peaks Source code
linkage Man page Source code
linkedMatchProb Source code
load.allele.database Man page Source code
load.linkage.info Source code
local.likelihood.table.reformatter Source code
local.likelihood.table.reformatter.peaks Source code
locus.likes Man page Source code
locus.likes.peaks Man page Source code
locus.unusual Source code
lower.bounds Source code
lower.bounds.peaks Source code
make.allelic.calls Source code
marginal Source code
masking.and.uncertain.profile Source code
masking.profile Source code
matchProb Source code
meanRfu Source code
minorAsDropin Source code
missing.alleles Source code
missing.alleles.peaks Source code
multiConverged Source code
multiKmeans Source code
objective.function Man page
optimisation.params Man page Source code
optimisation.params.peaks Man page Source code
optimised.parameter.table.reformatter Source code
output.report Man page Source code
output.report.peaks Man page Source code
overall.dropin.table.reformatter Source code
overall.dropout.table.reformatter Source code
overall.likelihood.table.reformatter Source code
pack.admin.input Man page Source code
pack.admin.input.peaks Man page Source code
pack.genetics.for.allele.report Source code
pack.genetics.for.output.report Source code
pack.genetics.for.peaks.reports Source code
peak.height.dose Source code
peak.heights.per.locus Source code
peaks.probabilities Source code
peaks.results.plot Man page Source code
penalties Man page Source code
penalties.peaks Source code
plotLikelihood.2d Man page Source code
plotUnnatributablePeaks Source code
plotline Source code
probabilities.function Source code
probability.peaks Source code
prod.matrix.col Source code
prod.matrix.row Source code
prosecution.hypothesis Man page Source code
prosecution.hypothesis.peaks Man page Source code
queried.vs.known Source code
rcontConvert Source code
read.csp.profile Man page Source code
read.known.profiles Man page Source code
read.peaks.profile Man page Source code
read.unc.profile Man page Source code
ref.table.to.latex Source code
reference.table.reformatter Source code
reference.tables.peaks Source code
relFactor Source code
relatedness.factors Source code
relistArguments Man page Source code
relistArguments.peaks Man page Source code
removeBelow Source code
removeContribs Source code
removeOneRow Source code
representation Source code
round.0 Source code
round.1 Source code
round.3 Source code
rounder Source code
rtf.formater Source code
sanity.check Source code
sanity.check.peaks Source code
seedTable Source code
selective.col.prod Source code
simplify.locus.names Source code
spacer Source code
startKmeans Source code
subGens Source code
subsetData Source code
summary.generator Source code
summary.helper Source code
system.info Source code
table.collapser Source code
transform.to.locus.centric Source code
transform.to.locus.centric.peaks Source code
unattribForRefs Source code
unattributable.plot.maker Source code
unattributablePeaks Source code
unitTests.likeLTD Man page
unusual.alleles Source code
unusual.alleles.peaks Source code
unusual.alleles.per.table Source code
upper.bounds Source code
upper.bounds.peaks Source code
likeLTD documentation built on June 12, 2017, 1:02 a.m.