pack.admin.input.peaks: likeLTD::pack.admin.input.peaks

In likeLTD: Tools to Evaluate DNA Profile Evidence

Description

Packs and verifies administrative information. Can be used as partial input for defence.hypothesis.peaks and prosecution.hypothesis.peaks

Usage

pack.admin.input.peaks(peaksFile, refFile, caseName='dummy',
                        databaseFile=NULL, kit=NULL, linkageFile=NULL,
                        detectionThresh=20,outputPath=getwd())

Arguments

peaksFile	Crime scene profile with peak height data
refFile	Reference profiles
caseName	Name of the current case
databaseFile	Path to the allele database
kit	Database to use if databaseFile not specified
linkageFile	Path to file with recombination rates for linked loci
outputPath	Path where the output should be stored. Defaults to current working directory.
detectionThresh	The detection threshold used to analyse peak heights from electrophoresis. This may be a single value, or a list of one value per locus. No peaks in the CSP should have a peak height below this value if a single value. No peaks in a given locus should have a peak height below the specified locus value.

Examples

## Not run: 
# datapath to example files
datapath = file.path(system.file("extdata", package="likeLTD"),"laboratory")

# File paths and case name for allele report
admin = pack.admin.input.peaks(
            peaksFile = file.path(datapath, 'laboratory-CSP.csv'),
            refFile = file.path(datapath, 'laboratory-reference.csv'),
            caseName = "Laboratory",
            detectionThresh = 20
             )

## End(Not run)

likeLTD documentation built on May 1, 2019, 7:58 p.m.