API for likeLTD
Tools to Evaluate DNA Profile Evidence
| Global functions | |
|---|---|
| CSP.heights.plot | Man page Source code |
| DEoptimLoop | Man page Source code |
| DNA17-db | Man page |
| DNAcontDeg | Source code |
| Identifiler-db | Man page |
| NISTglobalfiler-db | Man page |
| NISTidentifiler-db | Man page |
| SGMplus-db | Man page |
| Zcousin | Source code |
| Zgrandparent | Source code |
| Zhsibs | Source code |
| Zhuncle | Source code |
| Zsib | Source code |
| Zuncle | Source code |
| add.args.to.hypothesis | Source code |
| add.stutter.index | Source code |
| adjust.frequencies | Source code |
| agnostic.hypothesis | Source code |
| agnostic.hypothesis.peaks | Source code |
| all.epg.per.locus | Source code |
| all.genotypes.per.locus | Source code |
| all.genotypes.per.locus.R | Source code |
| allExplained | Source code |
| allele.report | Man page Source code |
| allele.report.peaks | Man page Source code |
| alterDBvals | Source code |
| alterHypothesis | Source code |
| calc.dropout | Source code |
| callLocusPeaks | Source code |
| callReplicatePeaks | Source code |
| checkConverged | Source code |
| checkData1 | Source code |
| checkData2 | Source code |
| checkDropin | Source code |
| checkParamNearBoundaries | Source code |
| checkStutter | Source code |
| chosen.parameter.table.reformatter | Source code |
| chosen.parameter.table.reformatter.peaks | Source code |
| combine.rares | Source code |
| combine.rares.locus | Source code |
| combine.rares.locus.peaks | Source code |
| combine.rares.peaks | Source code |
| combineStutter | Source code |
| common.report.section | Source code |
| common.report.section.peaks | Source code |
| compare.hypothesis.inputs | Source code |
| compatible.genotypes | Man page Source code |
| convert.to.binary | Source code |
| convertRelationship | Source code |
| create.contributor.table | Source code |
| create.hypothesis.string.peaks | Source code |
| create.likelihood | Man page Source code |
| create.likelihood.log | Man page Source code |
| create.likelihood.per.locus | Source code |
| create.likelihood.per.locus.peaks | Source code |
| create.likelihood.vectors | Man page Source code |
| create.likelihood.vectors.peaks | Man page Source code |
| csp.table.reformatter | Source code |
| csp.table.to.latex | Source code |
| defence.hypothesis | Man page Source code |
| defence.hypothesis.peaks | Man page Source code |
| determine.dropout | Man page Source code |
| dropDeg | Source code |
| empty.alleles | Source code |
| estimate.csp | Source code |
| estimates | Source code |
| estimates.reformatter | Source code |
| ethnic.database | Source code |
| ethnic.database.lus | Source code |
| evaluate | Man page Source code |
| evaluate.from.interim | Man page Source code |
| evaluate.from.interim.peaks | Man page Source code |
| evaluate.peaks | Man page Source code |
| explain.all.peaks | Source code |
| extrapolateBP | Source code |
| extrapolateLUS | Source code |
| file.inputs.table.reformatter | Source code |
| file.inputs.table.reformatter.peaks | Source code |
| filename.maker | Source code |
| fill.unknown.LUS | Source code |
| filter.below.thresh.peaks | Source code |
| filterCertains | Source code |
| formatAllele | Source code |
| formatRef | Source code |
| genotype.factors | Source code |
| geometric.series | Source code |
| get.database.values | Source code |
| get.likely.genotypes | Man page Source code |
| get.likely.genotypes.peaks | Man page Source code |
| get.representation.rfu | Source code |
| getDNAcontDeg | Source code |
| getHeightsQ | Source code |
| getHeightsUnattrib | Source code |
| getLocusCertains | Source code |
| getMatchProb | Source code |
| getMatching | Source code |
| getMaxAF | Source code |
| getPeakContributors | Source code |
| getQpeaks | Source code |
| getReplicateCertains | Source code |
| getSteps | Source code |
| het | Source code |
| hetLinked | Source code |
| hom | Source code |
| homLinked | Source code |
| hyp.D | Source code |
| hyp.P | Source code |
| hypothesis.generator | Source code |
| hypothesis.generator.peaks | Source code |
| ideal | Source code |
| inRange | Source code |
| initial.arguments | Man page Source code |
| initial.arguments.peaks | Source code |
| interim | Source code |
| isSingleRefReplicatedAll | Source code |
| isSingleRefReplicatedCertain | Source code |
| kmeansIt | Source code |
| kmeanslocus | Source code |
| known.epg.per.locus | Source code |
| latex.maker | Source code |
| latex.table.footer | Source code |
| latex.table.header | Source code |
| lgc-allele-freqs-wbp | Man page |
| likeLTD | Man page |
| likelihood.constructs.per.locus | Source code |
| likelihood.constructs.per.locus.peaks | Source code |
| linkage | Man page Source code |
| linkedMatchProb | Source code |
| load.allele.database | Man page Source code |
| load.linkage.info | Source code |
| local.likelihood.table.reformatter | Source code |
| local.likelihood.table.reformatter.peaks | Source code |
| locus.likes | Man page Source code |
| locus.likes.peaks | Man page Source code |
| locus.unusual | Source code |
| lower.bounds | Source code |
| lower.bounds.peaks | Source code |
| make.allelic.calls | Source code |
| marginal | Source code |
| masking.and.uncertain.profile | Source code |
| masking.profile | Source code |
| matchProb | Source code |
| meanRfu | Source code |
| minorAsDropin | Source code |
| missing.alleles | Source code |
| missing.alleles.peaks | Source code |
| multiConverged | Source code |
| multiKmeans | Source code |
| objective.function | Man page |
| optimisation.params | Man page Source code |
| optimisation.params.peaks | Man page Source code |
| optimised.parameter.table.reformatter | Source code |
| output.report | Man page Source code |
| output.report.peaks | Man page Source code |
| overall.dropin.table.reformatter | Source code |
| overall.dropout.table.reformatter | Source code |
| overall.likelihood.table.reformatter | Source code |
| pack.admin.input | Man page Source code |
| pack.admin.input.peaks | Man page Source code |
| pack.genetics.for.allele.report | Source code |
| pack.genetics.for.output.report | Source code |
| pack.genetics.for.peaks.reports | Source code |
| peak.height.dose | Source code |
| peak.heights.per.locus | Source code |
| peaks.probabilities | Source code |
| peaks.results.plot | Man page Source code |
| penalties | Man page Source code |
| penalties.peaks | Source code |
| plotLikelihood.2d | Man page Source code |
| plotUnnatributablePeaks | Source code |
| plotline | Source code |
| probabilities.function | Source code |
| probability.peaks | Source code |
| prod.matrix.col | Source code |
| prod.matrix.row | Source code |
| prosecution.hypothesis | Man page Source code |
| prosecution.hypothesis.peaks | Man page Source code |
| queried.vs.known | Source code |
| rcontConvert | Source code |
| read.csp.profile | Man page Source code |
| read.known.profiles | Man page Source code |
| read.peaks.profile | Man page Source code |
| read.unc.profile | Man page Source code |
| ref.table.to.latex | Source code |
| reference.table.reformatter | Source code |
| reference.tables.peaks | Source code |
| relFactor | Source code |
| relatedness.factors | Source code |
| relistArguments | Man page Source code |
| relistArguments.peaks | Man page Source code |
| removeBelow | Source code |
| removeContribs | Source code |
| removeOneRow | Source code |
| representation | Source code |
| round.0 | Source code |
| round.1 | Source code |
| round.3 | Source code |
| rounder | Source code |
| rtf.formater | Source code |
| sanity.check | Source code |
| sanity.check.peaks | Source code |
| seedTable | Source code |
| selective.col.prod | Source code |
| simplify.locus.names | Source code |
| spacer | Source code |
| startKmeans | Source code |
| subGens | Source code |
| subsetData | Source code |
| summary.generator | Source code |
| summary.helper | Source code |
| system.info | Source code |
| table.collapser | Source code |
| transform.to.locus.centric | Source code |
| transform.to.locus.centric.peaks | Source code |
| unattribForRefs | Source code |
| unattributable.plot.maker | Source code |
| unattributablePeaks | Source code |
| unitTests.likeLTD | Man page |
| unusual.alleles | Source code |
| unusual.alleles.peaks | Source code |
| unusual.alleles.per.table | Source code |
| upper.bounds | Source code |
| upper.bounds.peaks | Source code |
