lilikoi.explr: Exploratory analysis

In lilikoi: Metabolomics Personalized Pathway Analysis Tool

Exploratory analysis

Description

Performs source of variation test and build PCA and t-SNE plots to visualize important information.

Usage

lilikoi.explr(data, demo.data, pca = FALSE, tsne = FALSE)

Arguments

data	is a input data frame for analysis with sample ids as row names and metabolite names or pathway names as column names.
demo.data	is a demographic data frame with sample ids as row names, sample groups and demographic variable names as column names.
pca	if TRUE, PCA plot will be out.
tsne	if TRUE, T-SNE plot will be out.

Value

Source of variation test results and PCA and t-SNE plot

Examples

# lilikoi.explr(data, demo.data, pca=TRUE, tsne=FALSE)

lilikoi documentation built on Oct. 6, 2022, 1:05 a.m.