lilikoi.meta_path: Metabolite-pathway regression

Description Usage Arguments Value

View source: R/lilikoi.meta_path.R

Description

Performs single variate linear regression between selected pathways and each of their metabolites. Output the network plot between pathways and metabolties.

Usage

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lilikoi.meta_path(
  PDSmatrix,
  selected_Pathways_Weka,
  Metabolite_pathway_table,
  pathway = "Alanine, Aspartate And Glutamate Metabolism"
)

Arguments

PDSmatrix

Pathway deregulation score matrix

selected_Pathways_Weka

Selected top pathways from the featureSelection function

Metabolite_pathway_table

Metabolites mapping table

pathway

interested pathway name

Value

A bipartite graph of the relationships between pathways and their corresponding metabolites.


lilikoi documentation built on Jan. 15, 2021, 3:32 p.m.