API for lineagefreq
Lineage Frequency Dynamics from Genomic Surveillance Counts
| Global functions | |
|---|---|
| .compute_wis | Source code |
| .engine_fga | Source code |
| .engine_garw | Source code |
| .engine_hier_mlr | Source code |
| .engine_mlr | Source code |
| .engine_piantham | Source code |
| .get_registered_engine | Source code |
| .get_registry | Source code |
| .get_stan_model | Source code |
| .lfq_palette | Source code |
| .lfq_scale_colour | Source code |
| .lfq_scale_fill | Source code |
| .lfq_theme | Source code |
| .pct_label | Source code |
| .plot_advantage | Source code |
| .plot_frequency | Source code |
| .plot_residuals | Source code |
| .plot_trajectory | Source code |
| .prepare_stan_data | Source code |
| .set_registry | Source code |
| .stan_model_path | Source code |
| as.data.frame.lfq_data | Man page Source code |
| as_lfq_data | Man page Source code |
| as_lfq_data.data.frame | Man page Source code |
| as_lfq_data.lfq_data | Man page Source code |
| assert_col | Source code |
| assert_date | Source code |
| assert_pos_int | Source code |
| assert_prob | Source code |
| augment.lfq_fit | Man page Source code |
| autoplot | Man page |
| autoplot.lfq_fit | Man page Source code |
| autoplot.lfq_forecast | Man page Source code |
| backtest | Man page Source code |
| cdc_ba2_transition | Man page |
| cdc_sarscov2_jn1 | Man page |
| coef.lfq_fit | Man page Source code |
| collapse_lineages | Man page Source code |
| compare_models | Man page Source code |
| filter_sparse | Man page Source code |
| fit_model | Man page Source code |
| forecast | Man page Source code |
| forecast.lfq_fit | Man page Source code |
| glance.lfq_fit | Man page Source code |
| growth_advantage | Man page Source code |
| influenza_h3n2 | Man page |
| is_lfq_data | Man page Source code |
| lfq_advantage | Man page Source code |
| lfq_data | Man page Source code |
| lfq_engines | Man page Source code |
| lfq_fit | Man page Source code |
| lfq_forecast | Man page Source code |
| lfq_score | Man page Source code |
| lfq_stan_available | Man page Source code |
| lfq_summary | Man page Source code |
| lfq_version | Man page Source code |
| lineagefreq | Man page |
| lineagefreq-package | Man page |
| logLik.lfq_fit | Source code |
| log_sum_exp | Source code |
| nobs.lfq_fit | Source code |
| plot_backtest | Man page Source code |
| print.lfq_backtest | Source code |
| print.lfq_data | Source code |
| print.lfq_fit | Man page Source code |
| print.lfq_forecast | Source code |
| read_lineage_counts | Man page Source code |
| reexports | Man page |
| register_engine | Man page Source code |
| sarscov2_us_2022 | Man page |
| score_forecasts | Man page Source code |
| sequencing_power | Man page Source code |
| simulate_dynamics | Man page Source code |
| summarize_emerging | Man page Source code |
| summary.lfq_fit | Man page Source code |
| tidy.lfq_fit | Man page Source code |
| unregister_engine | Man page Source code |
| vcov.lfq_fit | Source code |
