influenza_h3n2: Simulated influenza A/H3N2 clade frequency data

In lineagefreq: Lineage Frequency Dynamics from Genomic Surveillance Counts

Simulated influenza A/H3N2 clade frequency data

Description

A simulated dataset of weekly influenza A/H3N2 clade sequence counts over a single Northern Hemisphere season (24 weeks).

Usage

influenza_h3n2

Format

A data frame with 96 rows and 4 columns:

date

Collection date (Date, weekly).

clade

Clade name (character).

count

Number of sequences (integer).

total

Total sequences for this week (integer).

Source

Simulated based on 'Nextstrain' influenza clade dynamics.

Examples

data(influenza_h3n2)
x <- lfq_data(influenza_h3n2, lineage = clade,
              date = date, count = count, total = total)
x

lineagefreq documentation built on April 3, 2026, 9:09 a.m.