lfq_summary: Convert lfq_fit results to a summary tibble
In lineagefreq: Lineage Frequency Dynamics from Genomic Surveillance Counts
lfq_summary R Documentation
Convert lfq_fit results to a summary tibble
Description
Returns a one-row-per-lineage summary with growth rates,
fitted frequencies at first and last time points, and
growth advantage in multiple scales.
Usage
lfq_summary(fit, generation_time = NULL)
Arguments
fit
An lfq_fit object.
generation_time
Generation time for Rt calculation.
Value
A tibble.
Examples
sim <- simulate_dynamics(n_lineages = 3,
advantages = c("A" = 1.2, "B" = 0.8), seed = 1)
fit <- fit_model(sim)
lfq_summary(fit, generation_time = 5)
lineagefreq documentation built on April 3, 2026, 9:09 a.m.
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| lfq_summary | R Documentation |
Convert lfq_fit results to a summary tibble
Description
Returns a one-row-per-lineage summary with growth rates, fitted frequencies at first and last time points, and growth advantage in multiple scales.
Usage
lfq_summary(fit, generation_time = NULL)
Arguments
fit |
An |
generation_time |
Generation time for Rt calculation. |
Value
A tibble.
Examples
sim <- simulate_dynamics(n_lineages = 3,
advantages = c("A" = 1.2, "B" = 0.8), seed = 1)
fit <- fit_model(sim)
lfq_summary(fit, generation_time = 5)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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