| ftrunc | R Documentation |
Obtains the adjusted p-values for possibly truncated Holm, Hochberg, and Hommel procedures.
ftrunc(p, test = "hommel", gamma = 1)
p |
The raw p-values for elementary hypotheses. |
test |
The test to use, e.g., "holm", "hochberg", or "hommel" (default). |
gamma |
The value of the truncation parameter. Defaults to 1 for the regular Holm, Hochberg, or Hommel procedure. |
A list with the following components:
inthyp: The indicator matrix for the intersection hypotheses.
pinter: The local p-values for the intersection hypotheses.
padj: The adjusted p-values for the elementary hypotheses.
Kaifeng Lu, kaifenglu@gmail.com
Alex Dmitrienko, Ajit C. Tamhane, and Brian L. Wiens. General multistage gatekeeping procedures. Biometrical Journal. 2008; 5:667-677.
pvalues <- matrix(c(0.01,0.005,0.015,0.022, 0.02,0.015,0.010,0.023),
nrow=2, ncol=4, byrow=TRUE)
ftrunc(pvalues, "hochberg")
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