fseqbon: Group sequential trials using Bonferroni-based graphical...

In lrstat: Power and Sample Size Calculation for Non-Proportional Hazards and Beyond

Group sequential trials using Bonferroni-based graphical approaches

Description

Obtains the test results for group sequential trials using graphical approaches based on weighted Bonferroni tests.

Usage

fseqbon(
  w,
  G,
  alpha = 0.025,
  kMax,
  typeAlphaSpending = NULL,
  parameterAlphaSpending = NULL,
  incidenceMatrix = NULL,
  maxInformation = NULL,
  p,
  information,
  spendingTime = NULL
)

Arguments

w	The vector of initial weights for elementary hypotheses.
G	The initial transition matrix.
alpha	The significance level. Defaults to 0.025.
kMax	The maximum number of stages.
typeAlphaSpending	The vector of alpha spending functions. Each element is one of the following: "OF" for O'Brien-Fleming boundaries, "P" for Pocock boundaries, "WT" for Wang & Tsiatis boundaries, "sfOF" for O'Brien-Fleming type spending function, "sfP" for Pocock type spending function, "sfKD" for Kim & DeMets spending function, "sfHSD" for Hwang, Shi & DeCani spending function, and "none" for no early efficacy stopping. Defaults to "sfOF" if not provided.
parameterAlphaSpending	The vector of parameter values for the alpha spending functions. Each element corresponds to the value of Delta for "WT", rho for "sfKD", or gamma for "sfHSD". Defaults to missing if not provided.
incidenceMatrix	The incidence matrix indicating whether the specific hypothesis will be tested at the given look. The number of columns of incidenceMatrix must be equal to the maximum number of study looks (kMax). If not provided, defaults to testing each hypothesis at all study looks.
maxInformation	The vector of target maximum information for each hypothesis. Defaults to a vector of 1s if not provided.
p	The matrix of raw p-values for each hypothesis by study look.
information	The matrix of observed information for each hypothesis by study look.
spendingTime	The spending time for alpha spending by study look. If not provided, it is the same as informationRates calculated from information and maxInformation.

Value

A vector to indicate the first look the specific hypothesis is rejected (0 if the hypothesis is not rejected).

Author(s)

Kaifeng Lu, [e-mail]

References

Willi Maurer and Frank Bretz. Multiple testing in group sequential trials using graphical approaches. Statistics in Biopharmaceutical Research. 2013; 5:311-320.

Examples

# Case study from Maurer & Bretz (2013)

fseqbon(
  w = c(0.5, 0.5, 0, 0),
  G = matrix(c(0, 0.5, 0.5, 0,  0.5, 0, 0, 0.5,
               0, 1, 0, 0,  1, 0, 0, 0),
             nrow=4, ncol=4, byrow=TRUE),
  alpha = 0.025,
  kMax = 3,
  typeAlphaSpending = rep("sfOF", 4),
  maxInformation = rep(1, 4),
  p = matrix(c(0.0062, 0.017, 0.009, 0.13,
               0.0002, 0.0035, 0.002, 0.06),
             nrow=4, ncol=2),
  information = matrix(c(rep(1/3, 4), rep(2/3, 4)),
                       nrow=4, ncol=2))

lrstat documentation built on June 23, 2024, 5:06 p.m.