View source: R/getDesignMeans.R
| getDesignMeanRatioEquiv | R Documentation |
Obtains the power given sample size or obtains the sample size given power for a group sequential design for equivalence in two-sample mean ratio.
getDesignMeanRatioEquiv(
beta = NA_real_,
n = NA_real_,
meanRatioLower = NA_real_,
meanRatioUpper = NA_real_,
meanRatio = 1,
CV = 1,
allocationRatioPlanned = 1,
normalApproximation = TRUE,
rounding = TRUE,
kMax = 1L,
informationRates = NA_real_,
alpha = 0.05,
typeAlphaSpending = "sfOF",
parameterAlphaSpending = NA_real_,
userAlphaSpending = NA_real_,
spendingTime = NA_real_
)
beta |
The type II error. |
n |
The total sample size. |
meanRatioLower |
The lower equivalence limit of mean ratio. |
meanRatioUpper |
The upper equivalence limit of mean ratio. |
meanRatio |
The mean ratio under the alternative hypothesis. |
CV |
The coefficient of variation. |
allocationRatioPlanned |
Allocation ratio for the active treatment versus control. Defaults to 1 for equal randomization. |
normalApproximation |
The type of computation of the p-values.
If |
rounding |
Whether to round up sample size. Defaults to 1 for sample size rounding. |
kMax |
The maximum number of stages. |
informationRates |
The information rates. Fixed prior to the trial.
Defaults to |
alpha |
The significance level for each of the two one-sided tests. Defaults to 0.05. |
typeAlphaSpending |
The type of alpha spending. One of the following: "OF" for O'Brien-Fleming boundaries, "P" for Pocock boundaries, "WT" for Wang & Tsiatis boundaries, "sfOF" for O'Brien-Fleming type spending function, "sfP" for Pocock type spending function, "sfKD" for Kim & DeMets spending function, "sfHSD" for Hwang, Shi & DeCani spending function, "user" for user defined spending, and "none" for no early efficacy stopping. Defaults to "sfOF". |
parameterAlphaSpending |
The parameter value for the alpha spending. Corresponds to Delta for "WT", rho for "sfKD", and gamma for "sfHSD". |
userAlphaSpending |
The user defined alpha spending. Cumulative alpha spent up to each stage. |
spendingTime |
A vector of length |
An S3 class designMeanRatioEquiv object with three
components:
overallResults: A data frame containing the following variables:
overallReject: The overall rejection probability.
alpha: The significance level for each of the two one-sided
tests. Defaults to 0.05.
attainedAlpha: The attained significance level.
kMax: The number of stages.
information: The maximum information.
expectedInformationH1: The expected information under H1.
expectedInformationH0: The expected information under H0.
numberOfSubjects: The maximum number of subjects.
expectedNumberOfSubjectsH1: The expected number of subjects
under H1.
expectedNumberOfSubjectsH0: The expected number of subjects
under H0.
meanRatioLower: The lower equivalence limit of mean ratio.
meanRatioUpper: The upper equivalence limit of mean ratio.
meanRatio: The mean ratio under the alternative hypothesis.
CV: The coefficient of variation.
byStageResults: A data frame containing the following variables:
informationRates: The information rates.
efficacyBounds: The efficacy boundaries on the Z-scale for
each of the two one-sided tests.
rejectPerStage: The probability for efficacy stopping.
cumulativeRejection: The cumulative probability for efficacy
stopping.
cumulativeAlphaSpent: The cumulative alpha for each of
the two one-sided tests.
cumulativeAttainedAlpha: The cumulative probability for
efficacy stopping under H0.
efficacyP: The efficacy bounds on the p-value scale for
each of the two one-sided tests.
information: The cumulative information.
numberOfSubjects: The number of subjects.
efficacyMeanRatioLower: The efficacy boundaries on the
mean ratio scale for the one-sided null hypothesis on the
lower equivalence limit.
efficacyMeanRatioUpper: The efficacy boundaries on the
mean ratio scale for the one-sided null hypothesis on the
upper equivalence limit.
settings: A list containing the following input parameters:
typeAlphaSpending: The type of alpha spending.
parameterAlphaSpending: The parameter value for alpha
spending.
userAlphaSpending: The user defined alpha spending.
spendingTime: The error spending time at each analysis.
allocationRatioPlanned: Allocation ratio for the active
treatment versus control.
normalApproximation: The type of computation of the p-values.
If TRUE, the variance is assumed to be known, otherwise
the calculations are performed with the t distribution. The exact
calculation using the t distribution is only implemented for the
fixed design.
rounding: Whether to round up sample size.
Kaifeng Lu, kaifenglu@gmail.com
# Example 1: group sequential trial power calculation
(design1 <- getDesignMeanRatioEquiv(
beta = 0.1, n = NA, meanRatioLower = 0.8, meanRatioUpper = 1.25,
meanRatio = 1, CV = 0.35,
kMax = 4, alpha = 0.05, typeAlphaSpending = "sfOF"))
# Example 2: sample size calculation for t-test
(design2 <- getDesignMeanRatioEquiv(
beta = 0.1, n = NA, meanRatioLower = 0.8, meanRatioUpper = 1.25,
meanRatio = 1, CV = 0.35,
normalApproximation = FALSE, alpha = 0.05))
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