Nothing
macc <-
function(dat,model.type=c("single","multilevel","twolevel"),method=c("HL","TS","HL-TS"),
delta=NULL,interval=c(-0.90,0.90),tol=10e-4,max.itr=500,conf.level=0.95,
optimizer=c("optimx","bobyqa","Nelder_Mead"),mix.pkg=c("nlme","lme4"),
random.indep=TRUE,random.var.equal=FALSE,u.int=FALSE,Sigma.update=TRUE,
var.constraint=TRUE,random.var.update=TRUE,logLik.type=c("logLik","HL"),
error.indep=TRUE,error.var.equal=FALSE,
sens.plot=FALSE,sens.interval=seq(-1,1,by=0.01),legend.pos="topright",
xlab=expression(delta),ylab=expression(hat(AB)),
cex.lab=1,cex.axis=1,lgd.cex=1,lgd.pt.cex=1,plot.delta0=TRUE,...)
{
if(model.type[1]=="single")
{
if(is.null(delta))
{
delta<-0
}
run.time<-system.time(re<-cma.uni.delta(dat,delta=delta,conf.level=conf.level))
if(sens.plot)
{
re.sens<-cma.uni.sens(dat,delta=sens.interval,conf.level=conf.level)
cma.uni.plot(re.sens,re,delta=NULL,legend.pos=legend.pos,xlab=xlab,ylab=ylab,
cex.lab=cex.lab,cex.axis=cex.axis,lgd.cex=lgd.cex,lgd.pt.cex=1,plot.delta0=plot.delta0,...)
}
}else
if(model.type[1]=="multilevel")
{
if(is.null(delta))
{
if(method[1]=="TS")
{
run.time1<-system.time(re1<-optimize(cma.uni.mix.dhl,interval=interval,dat=dat,tol=tol,max.itr=0,optimizer=optimizer,
mix.pkg=mix.pkg,random.indep=random.indep,random.var.equal=random.var.equal,
u.int=u.int,Sigma.update=Sigma.update,logLik.type=logLik.type,maximum=TRUE))
run.time2<-system.time(re<-cma.uni.mix(dat,delta=re1$maximum,conf.level=conf.level,optimizer=optimizer,mix.pkg=mix.pkg,
random.indep=random.indep,random.var.equal=random.var.equal,u.int=u.int))
run.time<-run.time1+run.time2
}else
{
run.time1<-system.time(re1<-optimize(cma.uni.mix.dhl,interval=interval,dat=dat,tol=tol,max.itr=max.itr,optimizer=optimizer,
mix.pkg=mix.pkg,random.indep=random.indep,random.var.equal=random.var.equal,
u.int=u.int,Sigma.update=Sigma.update,var.constraint=var.constraint,
random.var.update=random.var.update,logLik.type=logLik.type,maximum=TRUE))
if(method[1]=="HL-TS")
{
run.time2<-system.time(re<-cma.uni.mix(dat,delta=re1$maximum,conf.level=conf.level,optimizer=optimizer,mix.pkg=mix.pkg,
random.indep=random.indep,random.var.equal=random.var.equal,u.int=u.int))
}
if(method[1]=="HL")
{
run.time2<-system.time(re<-cma.uni.mix.hl(dat,delta=re1$maximum,tol=tol,max.itr=max.itr,alpha=1-conf.level,
random.indep=random.indep,optimizer=optimizer,mix.pkg=mix.pkg,
random.var.equal=random.var.equal,u.int=u.int,
Sigma.update=Sigma.update,var.constraint=var.constraint,
random.var.update=random.var.update))
}
run.time<-run.time1+run.time2
}
}else
{
if(method[1]=="TS")
{
run.time<-system.time(re<-cma.uni.mix(dat,delta=delta,conf.level=conf.level,optimizer=optimizer,mix.pkg=mix.pkg,
random.indep=random.indep,random.var.equal=random.var.equal,u.int=u.int))
}
if(method[1]=="HL")
{
run.time<-system.time(re<-cma.uni.mix.hl(dat,delta=delta,tol=tol,max.itr=max.itr,alpha=1-conf.level,random.indep=random.indep,
optimizer=optimizer,mix.pkg=mix.pkg,random.var.equal=random.var.equal,u.int=u.int,
Sigma.update=Sigma.update,var.constraint=var.constraint,
random.var.update=random.var.update))
}
}
}else
if(model.type[1]=="twolevel")
{
if(is.null(delta))
{
if(method[1]=="TS")
{
run.time1<-system.time(re1<-optimize(cma.delta.lm.HL,interval=interval,dat=dat,max.itr=0,tol=tol,
error.indep=error.indep,error.var.equal=error.var.equal,Sigma.update=Sigma.update,
var.constraint=var.constraint,maximum=TRUE))
run.time2<-system.time(re<-cma.delta.lm(dat,delta=re1$maximum,max.itr=0,tol=tol,error.indep=error.indep,
error.var.equal=error.var.equal,Sigma.update=Sigma.update,
var.constraint=var.constraint))
run.time<-run.time1+run.time2
}else
{
run.time1<-system.time(re1<-optimize(cma.delta.lm.HL,interval=interval,dat=dat,max.itr=max.itr,tol=tol,
error.indep=error.indep,error.var.equal=error.var.equal,Sigma.update=Sigma.update,
var.constraint=var.constraint,maximum=TRUE))
if(method[1]=="HL")
{
run.time2<-system.time(re<-cma.delta.lm(dat,delta=re1$maximum,max.itr=max.itr,tol=tol,error.indep=error.indep,
error.var.equal=error.var.equal,Sigma.update=Sigma.update,
var.constraint=var.constraint))
}
if(method[1]=="HL-TS")
{
run.time2<-system.time(re<-cma.delta.lm(dat,delta=re1$maximum,max.itr=0,tol=tol,error.indep=error.indep,
error.var.equal=error.var.equal,Sigma.update=Sigma.update,
var.constraint=var.constraint))
}
run.time<-run.time1+run.time2
}
}else
{
if(method[1]=="TS")
{
run.time<-system.time(re<-cma.delta.lm(dat,delta=delta,max.itr=0,tol=tol,error.indep=error.indep,
error.var.equal=error.var.equal,Sigma.update=Sigma.update,
var.constraint=var.constraint))
}
if(method[1]=="HL")
{
run.time<-system.time(re<-cma.delta.lm(dat,delta=delta,max.itr=max.itr,tol=tol,error.indep=error.indep,
error.var.equal=error.var.equal,Sigma.update=Sigma.update,
var.constraint=var.constraint))
}
}
}
re$time<-run.time
return(re)
if(as.numeric(re$Var.comp[1])<1e-5)
{
warning("The variance of A's random effect is less than 1e-5.")
}
return(re)
if(as.numeric(re$Var.comp[2])<1e-5)
{
warning("The variance of C's random effect is less than 1e-5.")
}
return(re)
if(as.numeric(re$Var.comp[3])<1e-5)
{
warning("The variance of B's random effect is less than 1e-5.")
}
}
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