markovchain: Easy Handling Discrete Time Markov Chains
Version 0.6.9.3

Functions and S4 methods to create and manage discrete time Markov chains more easily. In addition functions to perform statistical (fitting and drawing random variates) and probabilistic (analysis of their structural proprieties) analysis are provided.

Browse man pages Browse package API and functions Browse package files

AuthorGiorgio Alfredo Spedicato [aut,cre], Tae Seung Kang [aut], Sai Bhargav Yalamanchi [aut], Mildenberger Thoralf [ctb], Deepak Yadav [ctb], Nacho Cordón Castillo [ctb], Vandit Jain [ctb]
Date of publication2017-05-19 06:17:49 UTC
MaintainerGiorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
LicenseGPL-2
Version0.6.9.3
URL http://github.com/spedygiorgio/markovchain/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("markovchain")

Man pages

absorbingStates: Various function to perform structural analysis of DTMC
blanden: Mobility between income quartiles
conditionalDistribution: 'conditionalDistribution' of a Markov Chain
craigsendi: CD4 cells counts on HIV Infects between zero and six month
ctmc-class: Class '"ctmc"'
ctmcFit: Function to fit a CTMC
firstPassage: First passage across states
fitHigherOrderMarkovChain: Functions to fit a higher order Markov chain
fitHighOrderMultivarMC: Function to fit Higher Order Multivariate Markov chain
generatorToTransitionMatrix: Function to obtain the transition matrix from the generator.
getName: Method to retrieve name of markovchain object
HigherOrderMarkovChain-class: Class '"HigherOrderMarkovChain"'
holson: Holson data set
hommc-class: An S4 class for representing High Order Multivariate...
hommc-show: Function to display the details of hommc object
inferHyperparam: Function to infer the hyperparameters for Bayesian inference...
is.accessible: Verify if a state j is reachable from state i.
is.irreducible: Function to check if a Markov chain is irreducible
kullback: Example from Kullback and Kupperman Tests for Contingency...
markovchain-class: Class '"markovchain"'
markovchainFit: Function to fit a discrete Markov chain
markovchainList-class: Class '"markovchainList"'
markovchainListFit: markovchainListFit
markovchain-package: Easy Handling Discrete Time Markov Chains
markovchainSequence: Function to generate a sequence of states from homogeneous...
multinomialConfidenceIntervals: A function to compute multinomial confidence intervals of...
predictiveDistribution: Function to compute the probability of observing a new data...
preproglucacon: Preprogluccacon DNA protein bases sequences
priorDistribution: Prior Distribution
rain: Alofi island daily rainfall
rctmc: Function to generate a sequence of random CTMC transitions.
rmarkovchain: Function to generate a sequence of states from homogeneous or...
sales: Sales Demand Sequences
setName: Method to set name of markovchain object
states: Defined states of a transition matrix
statisticalTests: Various functions to perform statistical inference of DTMC
steadyStates: Stationary states of a 'markovchain' objeect
transition2Generator: Return the generator matrix for a corresponding transition...
transitionProbability: Function to get the transition probabilities from initial to...

Functions

!=,markovchain,markovchain-method Man page
*,markovchain,markovchain-method Man page
*,markovchain,matrix-method Man page
*,markovchain,numeric-method Man page
*,matrix,markovchain-method Man page
*,numeric,markovchain-method Man page
==,markovchain,markovchain-method Man page
HigherOrderMarkovChain-class Man page
[,markovchain,ANY,ANY,ANY-method Man page
[[,markovchainList-method Man page
^,markovchain,numeric-method Man page
absorbingStates Man page
absorbingStates,markovchain-method Man page
addNamedColumns Source code
allFreqProbMat Source code
allTransMat Source code
assessOrder Man page Source code
assessStationarity Man page Source code
blanden Man page
canonicForm Man page Source code
canonicForm,markovchain-method Man page
canonicFormRcpp Source code
checkMatrix Source code
checkMatrix4Homogeneity Source code
checkSequence Source code
coerce,data.frame,markovchain-method Man page
coerce,etm,markovchain-method Man page
coerce,markovchain,data.frame-method Man page
coerce,markovchain,igraph-method Man page
coerce,markovchain,matrix-method Man page
coerce,markovchain,sparseMatrix-method Man page
coerce,matrix,markovchain-method Man page
coerce,msm,markovchain-method Man page
coerce,msm.est,markovchain-method Man page
coerce,sparseMatrix,markovchain-method Man page
coerce,table,markovchain-method Man page
commStatesFinderRcpp Source code
commclassesKernelRcpp Source code
communicatingClasses Man page Source code
communicatingClassesRcpp Source code
conditionalDistribution Man page
conditionalDistribution,markovchain-method Man page
craigsendi Man page
createSequenceMatrix Man page Source code
ctmc-class Man page
ctmcEigen Source code
ctmcFit Man page Source code
df2Mc Source code
dim,ctmc-method Man page
dim,markovchain-method Man page
dim,markovchainList-method Man page
eqn1 Source code
eqn3 Source code
etm2Mc Source code
findNijPjk Source code
firstPassage Man page Source code
firstpassageKernelRcpp Source code
fitHighOrderMultivarMC Man page Source code
fitHigherOrder Man page Source code
fn1 Source code
fn3 Source code
gcdRcpp Source code
generatorToTransitionMatrix Man page Source code
getMode Source code
getNet Source code
holson Man page
hommc Man page
hommc-class Man page
inferHyperparam Man page Source code
initialize,ctmc-method Man page
initialize,markovchain-method Man page
is.accessible Man page Source code
is.irreducible Man page Source code
kullback Man page Man page
lexicographical_sort Source code
list2Mc Source code
markovchain Man page
markovchain-class Man page
markovchain-package Man page
markovchain2sparseMatrix Source code
markovchainFit Man page Source code
markovchainList-class Man page
markovchainListFit Man page Source code
markovchainListRcpp Source code
markovchainSPHelper Source code
markovchainSequence Man page Source code
markovchainSequenceParallel Source code
markovchainSequenceParallelRcpp Source code
markovchainSequenceRcpp Source code
matr2Mc Source code
matrix2Mc Source code
mc2Df Source code
mc2igraph Source code
mc2matrix Source code
mcEigen Source code
mcFitLaplacianSmooth Source code
mcLexSort Source code
mcListFitForList Source code
msm2Mc Source code
msmest2Mc Source code
multinomialCIForRowRcpp Source code
multinomialCIRcpp Source code
multinomialConfidenceIntervals Man page Source code
name Man page
name,markovchain-method Man page
name<- Man page
name<-,markovchain-method Man page
names,markovchain-method Man page
names<-,markovchain-method Man page
onAttach Source code
onUnload Source code
period Man page Source code
plot,markovchain,missing-method Man page
plotDiagrammeR Source code
plotdiagram Source code
predict,markovchain-method Man page
predict,markovchainList-method Man page
predictiveDistribution Man page Source code
preproglucacon Man page
print,markovchain-method Man page
print,markovchainList-method Man page
priorDistribution Man page Source code
rain Man page
rctmc Man page Source code
recurrentClasses Man page Source code
recurrentClassesRcpp Source code
rmarkovchain Man page Source code
sGenRcpp Source code
sProbRcpp Source code
sales Man page
seq2freqProb Man page Source code
seq2mat Source code
seq2matHigh Man page Source code
show,hommc-method Man page
show,markovchain-method Man page
show,markovchainList-method Man page
showHommc Source code
showInt Source code
sort,markovchain-method Man page
sparseMatrix2markovchain Source code
states Man page
states,ctmc-method Man page
states,markovchain-method Man page
steadyStates Man page
steadyStates,ctmc-method Man page
steadyStates,markovchain-method Man page
steadyStatesByRecurrentClasses Source code
summary,markovchain-method Man page
summaryKernelRcpp Source code
t,markovchain-method Man page
table2Mc Source code
transientStates Man page
transientStates,markovchain-method Man page
transition2Generator Man page Source code
transitionProbability Man page
transitionProbability,markovchain-method Man page
verifyEmpiricalToTheoretical Man page Source code
verifyHomogeneity Man page Source code
verifyMarkovProperty Man page Source code
whichColProb Source code

Files

inst
inst/CITATION
inst/extdata
inst/extdata/ltdItaData.txt
inst/doc
inst/doc/markovchainCrashIntro.pdf
inst/doc/an_introduction_to_markovchain_package.R
inst/doc/an_introduction_to_markovchain_package.Rnw
inst/doc/markovchainCrashIntro.R
inst/doc/complicateSteadyStates.Rmd
inst/doc/complicateSteadyStates.R
inst/doc/higher_order_markov_chains.pdf
inst/doc/higher_order_markov_chains.R
inst/doc/higher_order_markov_chains.Rnw
inst/doc/markovchainCrashIntro.Rmd
inst/doc/complicateSteadyStates.pdf
inst/doc/an_introduction_to_markovchain_package.pdf
tests
tests/testthat.R
tests/testthat
tests/testthat/testBasic1.R
tests/testthat/testMultinomCI.R
tests/testthat/testSteadyStates.R
tests/testthat/testHigherOrder.R
tests/testthat/testRecurrentClasses.R
tests/testthat/testOptimization.R
tests/testthat/testStatesClassification.R
tests/testthat/testetm.R
tests/testthat/testmsm.R
tests/testthat/testPeriod.R
tests/testthat/testPlot.R
tests/testthat/testFits.R
src
src/Makevars
src/1_fitHigherOrder.cpp
src/mapFitFunctionsSAI.h
src/sampler.cpp
src/1_ctmcFunctions4Fitting.cpp
src/3_multinomCI.cpp
src/0_classesAndMethods.cpp
src/2_probabilistic.cpp
src/mathHelperFunctions.h
src/Makevars.win
src/init.c
src/RcppExports.cpp
src/sampler.h
src/1_functions4Fitting.cpp
src/0_ctmcClassesAndMethodsSAI.cpp
NAMESPACE
demo
demo/bard.R
demo/quickStart.R
demo/00Index
demo/examples.R
demo/mathematica.R
demo/extractMatrices.R
demo/quasiBayesian.R
NEWS
data
data/rain.rda
data/sales.rda
data/preproglucacon.rda
data/blanden.rda
data/holson.rda
data/craigsendi.rda
data/kullback.rda
R
R/0_ctmcClassesAndMethodsSAI.R
R/0_hommc.R
R/sysdata.rda
R/2_probabilistic.R
R/data.R
R/0_classesAndMethods.R
R/5_statisticalTests.R
R/RcppExports.R
R/1_functions4Fitting.R
R/1_ctmcProbabilisticSAI.R
R/zzz.R
R/1_supplementaryPlot.R
R/0_higherOrder.R
vignettes
vignettes/an_introduction_to_markovchain_package.Rnw
vignettes/complicateSteadyStates.Rmd
vignettes/markovchainBiblio.bib
vignettes/mystyles.sty
vignettes/higher_order_markov_chains.Rnw
vignettes/markovchainCrashIntro.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/steadyStates.Rd
man/firstPassage.Rd
man/states.Rd
man/transition2Generator.Rd
man/is.accessible.Rd
man/hommc-show.Rd
man/priorDistribution.Rd
man/markovchainListFit.Rd
man/sales.Rd
man/HigherOrderMarkovChain-class.Rd
man/hommc-class.Rd
man/conditionalDistribution.Rd
man/rain.Rd
man/generatorToTransitionMatrix.Rd
man/setName.Rd
man/kullback.Rd
man/holson.Rd
man/multinomialConfidenceIntervals.Rd
man/preproglucacon.Rd
man/ctmcFit.Rd
man/rmarkovchain.Rd
man/predictiveDistribution.Rd
man/transitionProbability.Rd
man/blanden.Rd
man/markovchain-class.Rd
man/markovchainFit.Rd
man/markovchain-package.Rd
man/fitHighOrderMultivarMC.Rd
man/rctmc.Rd
man/fitHigherOrderMarkovChain.Rd
man/markovchainList-class.Rd
man/craigsendi.Rd
man/statisticalTests.Rd
man/is.irreducible.Rd
man/inferHyperparam.Rd
man/ctmc-class.Rd
man/absorbingStates.Rd
man/markovchainSequence.Rd
man/getName.Rd
markovchain documentation built on May 23, 2017, 9:07 a.m.