Man pages for markovchain
Easy Handling Discrete Time Markov Chains
| absorptionProbabilities | Absorption probabilities |
| aggregateStates | Aggregate a Markov chain's state space by Kullback-Leibler... |
| assessIndependence | Test independence of consecutive states of an empirical... |
| autoLump | Automatically aggregate a Markov chain by spectral clustering |
| autoplot.markovchain | Plot a Markov chain with ggplot2 |
| birthDeath | Build a birth-death Markov chain |
| blanden | Mobility between income quartiles |
| closestReversible | Closest reversible approximation of a Markov chain |
| committorAB | Calculates committor of a markovchain object with respect to... |
| conditionalDistribution | 'conditionalDistribution' of a Markov Chain |
| craigsendi | CD4 cells counts on HIV Infects between zero and six month |
| ctmc-class | Continuous time Markov Chains class |
| ctmcFit | Function to fit a CTMC |
| dirichletChain | Markov chain from a Dirichlet process |
| dot-asHtest | Standardize statistical inference results to R's htest... |
| entropyRate | Entropy rate of a Markov chain |
| expectedRewards | Expected Rewards for a markovchain |
| expectedRewardsBeforeHittingA | Expected first passage Rewards for a set of states in a... |
| ExpectedTime | Returns expected hitting time from state i to state j |
| firstPassage | First passage across states |
| firstPassageMultiple | function to calculate first passage probabilities |
| fitHigherOrder | Functions to fit a higher order Markov chain |
| fitHighOrderMultivarMC | Function to fit Higher Order Multivariate Markov chain |
| fitMTD | Fit a mixture transition distribution (MTD) model |
| freq2Generator | Returns a generator matrix corresponding to frequency matrix |
| fundamentalMatrix | Fundamental matrix of an absorbing Markov chain |
| gamblersRuin | Build a gambler's ruin Markov chain |
| generatorToTransitionMatrix | Function to obtain the transition matrix from the generator |
| getName | Method to retrieve name of markovchain object |
| higherOrderLogLik | Log-likelihood, deviance and information criteria of a higher... |
| HigherOrderMarkovChain-class | Higher order Markov Chains class |
| higherOrderPredict | Next-state probabilities and simulation for higher order... |
| hittingProbabilities | Hitting probabilities for markovchain |
| holson | Holson data set |
| hommc-class | An S4 class for representing High Order Multivariate... |
| hommc-show | Function to display the details of hommc object |
| ictmc-class | An S4 class for representing Imprecise Continuous Time... |
| identityChain | Identity Markov chain |
| impliedTimescales | Implied timescales of a Markov chain |
| impreciseProbabilityatT | Calculating full conditional probability using lower rate... |
| inferHyperparam | Function to infer the hyperparameters for Bayesian inference... |
| is.accessible | Verify if a state j is reachable from state i. |
| is.CTMCirreducible | Check if CTMC is irreducible |
| is.irreducible | Function to check if a Markov chain is irreducible (i.e.... |
| is.lumpable | Check exact lumpability of a Markov chain |
| is.regular | Check if a DTMC is regular |
| is.reversible | Check whether a Markov chain is reversible |
| is.stochasticallyMonotone | Check if a Markov chain is stochastically monotone |
| is.TimeReversible | checks if ctmc object is time reversible |
| kemenyConstant | Kemeny's constant of a Markov chain |
| kullback | Example from Kullback and Kupperman Tests for Contingency... |
| lazyChain | Build a lazy version of a Markov chain |
| lump | Aggregate a Markov chain over a partition |
| markovchain-class | Markov Chain class |
| markovchainFit | Function to fit a discrete Markov chain |
| markovchainList-class | Non homogeneus discrete time Markov Chains class |
| markovchainListFit | markovchainListFit |
| markovchain-package | Easy Handling Discrete Time Markov Chains |
| markovchainSequence | Function to generate a sequence of states from homogeneous... |
| meanAbsorptionTime | Mean absorption time |
| meanFirstPassageTime | Mean First Passage Time for irreducible Markov chains |
| meanNumVisits | Mean num of visits for markovchain, starting at each state |
| meanRecurrenceTime | Mean recurrence time |
| mergeWith | Merge two Markov chains by convex combination of their... |
| mixingTime | Mixing time of a Markov chain |
| multinomialConfidenceIntervals | A function to compute multinomial confidence intervals of... |
| names | Returns the states for a Markov chain object |
| noofVisitsDist | Expected fraction of the first N steps spent in each state |
| normalizedEntropyRate | Normalized entropy rate of a Markov chain |
| ones | Returns an Identity matrix |
| populationGeneticsModel | Build a population-genetics Markov chain (Moran or... |
| predictHommc | Simulate a higher order multivariate markovchain |
| predictiveDistribution | predictiveDistribution |
| preproglucacon | Preprogluccacon DNA protein bases sequences |
| priorDistribution | priorDistribution |
| probabilityatT | Calculating probability from a ctmc object |
| rain | Alofi island daily rainfall |
| randomMarkovChain | Random Markov chain |
| rctmc | rctmc |
| redistribute | Evolution of a distribution over time |
| relaxationTime | Relaxation time of a Markov chain |
| rmarkovchain | Function to generate a sequence of states from homogeneous or... |
| rouwenhorst | Discretize an AR(1) process into a Markov chain... |
| sales | Sales Demand Sequences |
| selectOrder | Select the order of a Markov chain by information criteria |
| sensitivity | Sensitivity of the stationary distribution to a state's... |
| setName | Method to set name of markovchain object |
| slem | Second largest eigenvalue modulus (SLEM) of a Markov chain |
| spectralGap | Spectral gap of a Markov chain |
| states | Defined states of a transition matrix |
| statisticalTests | Test the first-order Markov property of an empirical sequence |
| steadyStates | Stationary states of a 'markovchain' object |
| structuralAnalysis | Various function to perform structural analysis of DTMC |
| subchain | Restrict a Markov chain to a subset of states |
| tauchen | Discretize an AR(1) process into a Markov chain (Tauchen's... |
| timeCorrelations | Time correlations and time relaxations of observed sequences |
| tm_abs | Single Year Corporate Credit Rating Transititions |
| toBoundedChain | Apply a boundary condition to a Markov chain's first and last... |
| toDictionary | Represent a Markov chain as a plain R list |
| toDot | Export the transition graph as Graphviz DOT or Mermaid text |
| toFile | Write or read a Markov chain to or from a file |
| toNthOrder | Return the n-step transition chain |
| topologicalEntropy | Topological entropy of a Markov chain |
| transition2Generator | Return the generator matrix for a corresponding transition... |
| transitionProbability | Function to get the transition probabilities from initial to... |
| urnModel | Build an Ehrenfest urn model Markov chain |
| zeros | Matrix to create zeros |
