marmap: Import, Plot and Analyze Bathymetric and Topographic Data
Version 0.9.6

Import xyz data from the NOAA (National Oceanic and Atmospheric Administration, ), GEBCO (General Bathymetric Chart of the Oceans, ) and other sources, plot xyz data to prepare publication-ready figures, analyze xyz data to extract transects, get depth / altitude based on geographical coordinates, or calculate z-constrained least-cost paths.

AuthorEric Pante, Benoit Simon-Bouhet, and Jean-Olivier Irisson
Date of publication2017-01-10 15:32:25
MaintainerEric Pante <pante.eric@gmail.com>
LicenseGPL (>= 3)
Version0.9.6
URL https://github.com/ericpante/marmap
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("marmap")

Popular man pages

autoplot.bathy: Ploting bathymetric data with ggplot
getNOAA.bathy: Import bathymetric data from the NOAA server
griddify: Fill a grid with irregularly spaced data
lc.dist: Computes least cost distances between two or more locations
plot.bathy: Ploting bathymetric data
read.bathy: Read bathymetric data in XYZ format
readGEBCO.bathy: Read bathymetric data from a GEBCO file
See all...

All man pages Function index File listing

Man pages

aleutians: Bathymetric data for the Aleutians (Alaska)
antimeridian.box: Adds a box to maps including antimeridian
as.bathy: Convert to bathymetric data in an object of class bathy
as.raster: Convert bathymetric data to a raster layer
as.SpatialGridDataFrame: Convert bathymetric data to a spatial grid
as.xyz: Convert to xyz format
autoplot.bathy: Ploting bathymetric data with ggplot
celt: Bathymetric data for the North Est Atlantic
check.bathy: Sort bathymetric data matrix by increasing latitude and...
col2alpha: Adds alpha transparency to a (vector of) color(s)
collate.bathy: Collates two bathy matrices with data from either sides of...
combine.buffers: Create a new, (non circular) composite buffer from a list of...
create.buffer: Create a buffer of specified radius around one or several...
diag.bathy: Finds matrix diagonal for non-square matrices
dist2isobath: Computes the shortest great circle distance between any point...
etopo: Etopo colours
florida: Bathymetric data around Florida, USA
fortify.bathy: Extract bathymetry data in a data.frame
get.area: Get projected surface area
get.box: Get bathymetric information of a belt transect
get.depth: Get depth data by clicking on a map
getNOAA.bathy: Import bathymetric data from the NOAA server
get.sample: Get sample data by clicking on a map
get.transect: Compute approximate cross section along a depth transect
griddify: Fill a grid with irregularly spaced data
hawaii: Bathymetric data for Hawaii, USA
irregular: Irregularly spaced bathymetric data.
is.bathy: Test whether an object is of class bathy
lc.dist: Computes least cost distances between two or more locations
linesGC: Add Great Circle lines on a map
marmap: Import, plot and analyze bathymetric and topographic data
metallo: Coral sampling information from the North West Atlantic
nw.atlantic: Bathymetric data for the North West Atlantic
nw.atlantic.coast: Coastline data for the North West Atlantic
outline.buffer: Get a composite buffer in a format suitable for plotting its...
palette.bathy: Build a bathymetry- and/or topography-constrained color...
path.profile: Geographic coordinates, kilometric distance and depth along a...
plotArea: Plotting projected surface areas
plot.bathy: Ploting bathymetric data
plot.buffer: Plots a circular buffer and or its outline
plotProfile: Ploting bathymetric data along a transect or path
read.bathy: Read bathymetric data in XYZ format
readGEBCO.bathy: Read bathymetric data from a GEBCO file
scaleBathy: Adds a scale to a map
space.pies: Automatic placement of piecharts on maps
subsetBathy: Creates bathy objects from larger bathy objects
subsetSQL: Creating and querying local SQL database for bathymetric data
summary.bathy: Summary of bathymetric data of class 'bathy'
trans.mat: Transition matrix

Functions

aleutians Man page
antimeridian.box Man page Source code
as.SpatialGridDataFrame Man page Source code
as.bathy Man page Source code
as.raster Man page Source code
as.xyz Man page Source code
autoplot.bathy Man page Source code
celt Man page
check.bathy Man page Source code
col2alpha Man page Source code
collate.bathy Man page Source code
combine.buffers Man page Source code
create.buffer Man page Source code
diag.bathy Man page Source code
dist2isobath Man page Source code
etopo Man page
etopo.colors Man page Source code
etopo.colours Man page
florida Man page
fortify.bathy Man page Source code
get.area Man page Source code
get.box Man page Source code
get.depth Man page Source code
get.sample Man page Source code
get.transect Man page Source code
getNOAA.bathy Man page Source code
griddify Man page Source code
hawaii Man page
hawaii.sites Man page
irregular Man page
is.bathy Man page Source code
lc.dist Man page Source code
linesGC Man page Source code
marmap Man page Man page
metallo Man page
nw.atlantic Man page
nw.atlantic.coast Man page
outline.buffer Man page Source code
palette.bathy Man page Source code
path.profile Man page Source code
plot.bathy Man page Source code
plot.buffer Man page Source code
plotArea Man page Source code
plotProfile Man page Source code
print.buffer Man page Source code
read.bathy Man page Source code
readGEBCO.bathy Man page Source code
scaleBathy Man page Source code
scale_color_etopo Man page
scale_colour_etopo Man page Source code
scale_fill_etopo Man page Source code
setSQL Man page Source code
space.pies Man page Source code
subsetBathy Man page Source code
subsetSQL Man page Source code
summary.bathy Man page Source code
trans.mat Man page Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/marmap-ImportExport.pdf
inst/doc/marmap-DataAnalysis.pdf
inst/doc/marmap-DataAnalysis.pdf.asis
inst/doc/marmap.pdf.asis
inst/doc/marmap-ImportExport.pdf.asis
inst/doc/marmap.pdf
NAMESPACE
data
data/celt.rda
data/hawaii.rda
data/hawaii.sites.rda
data/metallo.rda
data/nw.atlantic.coast.rda
data/florida.rda
data/nw.atlantic.rda
data/aleutians.rda
data/irregular.rda
R
R/readGEBCO.bathy.R
R/read.bathy.R
R/plotArea.R
R/get.box.R
R/as.xyz.R
R/plot.buffer.R
R/dist2isobath.R
R/palette.etopo.R
R/autoplot.bathy.R
R/check.bathy.R
R/scaleBathy.R
R/get.area.R
R/combine.buffers.R
R/outline.buffer.R
R/trans.mat.R
R/lc.dist.R
R/antimeridian.box.R
R/collate.bathy.R
R/get.transect.R
R/subsetSQL.R
R/as.SpatialGridDataFrame.R
R/linesGC.R
R/plot.bathy.R
R/fortify.bathy.R
R/palette.bathy.R
R/create.buffer.R
R/print.buffer.R
R/summary.bathy.R
R/diag.bathy.R
R/space.pies.R
R/col2alpha.R
R/griddify.R
R/is.bathy.R
R/get.sample.R
R/path.profile.R
R/setSQL.R
R/get.depth.R
R/subsetBathy.R
R/getNOAA.bathy.R
R/as.bathy.R
R/as.raster.R
R/plotProfile.R
vignettes
vignettes/marmap-DataAnalysis.pdf.asis
vignettes/marmap.pdf.asis
vignettes/marmap-ImportExport.pdf.asis
MD5
build
build/vignette.rds
DESCRIPTION
man
man/collate.bathy.Rd
man/griddify.Rd
man/col2alpha.Rd
man/read.bathy.Rd
man/as.SpatialGridDataFrame.Rd
man/plot.bathy.Rd
man/dist2isobath.Rd
man/plotProfile.Rd
man/plotArea.Rd
man/irregular.Rd
man/fortify.bathy.Rd
man/subsetSQL.Rd
man/antimeridian.box.Rd
man/space.pies.Rd
man/as.raster.Rd
man/get.area.Rd
man/as.bathy.Rd
man/plot.buffer.Rd
man/get.depth.Rd
man/trans.mat.Rd
man/etopo.Rd
man/celt.Rd
man/linesGC.Rd
man/lc.dist.Rd
man/autoplot.bathy.Rd
man/create.buffer.Rd
man/florida.Rd
man/get.sample.Rd
man/combine.buffers.Rd
man/subsetBathy.Rd
man/readGEBCO.bathy.Rd
man/scaleBathy.Rd
man/nw.atlantic.Rd
man/marmap.Rd
man/metallo.Rd
man/as.xyz.Rd
man/get.box.Rd
man/diag.bathy.Rd
man/summary.bathy.Rd
man/is.bathy.Rd
man/palette.bathy.Rd
man/nw.atlantic.coast.Rd
man/check.bathy.Rd
man/getNOAA.bathy.Rd
man/get.transect.Rd
man/aleutians.Rd
man/hawaii.Rd
man/path.profile.Rd
man/outline.buffer.Rd
marmap documentation built on May 19, 2017, 10:59 a.m.

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