marmap: Import, Plot and Analyze Bathymetric and Topographic Data

Import xyz data from the NOAA, GEBCO and other sources, plot xyz data to prepare publication-ready figures, analyze xyz data to extract transects, get depth / altitude based on geographical coordinates, or calculate z-constrained least-cost paths.

Author
Eric Pante, Benoit Simon-Bouhet, and Jean-Olivier Irisson
Date of publication
2015-12-10 10:40:09
Maintainer
Eric Pante <pante.eric@gmail.com>
License
GPL (>= 3)
Version
0.9.5

View on CRAN

Man pages

aleutians
Bathymetric data for the Aleutians (Alaska)
antimeridian.box
Adds a box to maps including antimeridian
as.bathy
Convert to bathymetric data in an object of class bathy
as.raster
Convert bathymetric data to a raster layer
as.SpatialGridDataFrame
Convert bathymetric data to a spatial grid
as.xyz
Convert to xyz format
autoplot.bathy
Ploting bathymetric data with ggplot
celt
Bathymetric data for the North Est Atlantic
check.bathy
Sort bathymetric data matrix by increasing latitude and...
col2alpha
Adds alpha transparency to a (vector of) color(s)
collate.bathy
Collates two bathy matrices with data from either sides of...
combine.buffers
Create a new, (non circular) composite buffer from a list of...
create.buffer
Create a buffer of specified radius around one or several...
diag.bathy
Finds matrix diagonal for non-square matrices
dist2isobath
Computes the shortest great circle distance between any point...
etopo
Etopo colours
florida
Bathymetric data around Florida, USA
fortify.bathy
Extract bathymetry data in a data.frame
get.area
Get projected surface area
get.box
Get bathymetric information of a belt transect
get.depth
Get depth data by clicking on a map
getNOAA.bathy
Import bathymetric data from the NOAA server
get.sample
Get sample data by clicking on a map
get.transect
Compute approximate cross section along a depth transect
griddify
Fill a grid with irregularly spaced data
hawaii
Bathymetric data for Hawaii, USA
irregular
Irregularly spaced bathymetric data.
is.bathy
Test whether an object is of class bathy
lc.dist
Computes least cost distances between two or more locations
linesGC
Add Great Circle lines on a map
marmap
Import, plot and analyze bathymetric and topographic data
metallo
Coral sampling information from the North West Atlantic
nw.atlantic
Bathymetric data for the North West Atlantic
nw.atlantic.coast
Coastline data for the North West Atlantic
outline.buffer
Get a composite buffer in a format suitable for plotting its...
palette.bathy
Build a bathymetry- and/or topography-constrained color...
path.profile
Geographic coordinates, kilometric distance and depth along a...
plotArea
Plotting projected surface areas
plot.bathy
Ploting bathymetric data
plot.buffer
Plots a circular buffer and or its outline
plotProfile
Ploting bathymetric data along a transect or path
read.bathy
Read bathymetric data in XYZ format
readGEBCO.bathy
Read bathymetric data from a GEBCO file
scaleBathy
Adds a scale to a map
space.pies
Automatic placement of piecharts on maps
subsetBathy
Creates bathy objects from larger bathy objects
subsetSQL
Creating and querying local SQL database for bathymetric data
summary.bathy
Summary of bathymetric data of class 'bathy'
trans.mat
Transition matrix

Files in this package

marmap
marmap/inst
marmap/inst/CITATION
marmap/inst/doc
marmap/inst/doc/marmap-ImportExport.pdf
marmap/inst/doc/marmap-DataAnalysis.pdf
marmap/inst/doc/marmap-DataAnalysis.pdf.asis
marmap/inst/doc/marmap.pdf.asis
marmap/inst/doc/marmap-ImportExport.pdf.asis
marmap/inst/doc/marmap.pdf
marmap/NAMESPACE
marmap/data
marmap/data/celt.rda
marmap/data/hawaii.rda
marmap/data/hawaii.sites.rda
marmap/data/metallo.rda
marmap/data/nw.atlantic.coast.rda
marmap/data/florida.rda
marmap/data/nw.atlantic.rda
marmap/data/aleutians.rda
marmap/data/irregular.rda
marmap/R
marmap/R/readGEBCO.bathy.R
marmap/R/read.bathy.R
marmap/R/plotArea.R
marmap/R/get.box.R
marmap/R/as.xyz.R
marmap/R/plot.buffer.R
marmap/R/dist2isobath.R
marmap/R/palette.etopo.R
marmap/R/autoplot.bathy.R
marmap/R/check.bathy.R
marmap/R/scaleBathy.R
marmap/R/get.area.R
marmap/R/combine.buffers.R
marmap/R/outline.buffer.R
marmap/R/trans.mat.R
marmap/R/lc.dist.R
marmap/R/antimeridian.box.R
marmap/R/collate.bathy.R
marmap/R/get.transect.R
marmap/R/subsetSQL.R
marmap/R/as.SpatialGridDataFrame.R
marmap/R/linesGC.R
marmap/R/plot.bathy.R
marmap/R/fortify.bathy.R
marmap/R/palette.bathy.R
marmap/R/create.buffer.R
marmap/R/print.buffer.R
marmap/R/summary.bathy.R
marmap/R/diag.bathy.R
marmap/R/space.pies.R
marmap/R/col2alpha.R
marmap/R/griddify.R
marmap/R/is.bathy.R
marmap/R/get.sample.R
marmap/R/path.profile.R
marmap/R/setSQL.R
marmap/R/get.depth.R
marmap/R/subsetBathy.R
marmap/R/getNOAA.bathy.R
marmap/R/as.bathy.R
marmap/R/as.raster.R
marmap/R/plotProfile.R
marmap/vignettes
marmap/vignettes/marmap-DataAnalysis.pdf.asis
marmap/vignettes/marmap.pdf.asis
marmap/vignettes/marmap-ImportExport.pdf.asis
marmap/MD5
marmap/build
marmap/build/vignette.rds
marmap/DESCRIPTION
marmap/man
marmap/man/collate.bathy.Rd
marmap/man/griddify.Rd
marmap/man/col2alpha.Rd
marmap/man/read.bathy.Rd
marmap/man/as.SpatialGridDataFrame.Rd
marmap/man/plot.bathy.Rd
marmap/man/dist2isobath.Rd
marmap/man/plotProfile.Rd
marmap/man/plotArea.Rd
marmap/man/irregular.Rd
marmap/man/fortify.bathy.Rd
marmap/man/subsetSQL.Rd
marmap/man/antimeridian.box.Rd
marmap/man/space.pies.Rd
marmap/man/as.raster.Rd
marmap/man/get.area.Rd
marmap/man/as.bathy.Rd
marmap/man/plot.buffer.Rd
marmap/man/get.depth.Rd
marmap/man/trans.mat.Rd
marmap/man/etopo.Rd
marmap/man/celt.Rd
marmap/man/linesGC.Rd
marmap/man/lc.dist.Rd
marmap/man/autoplot.bathy.Rd
marmap/man/create.buffer.Rd
marmap/man/florida.Rd
marmap/man/get.sample.Rd
marmap/man/combine.buffers.Rd
marmap/man/subsetBathy.Rd
marmap/man/readGEBCO.bathy.Rd
marmap/man/scaleBathy.Rd
marmap/man/nw.atlantic.Rd
marmap/man/marmap.Rd
marmap/man/metallo.Rd
marmap/man/as.xyz.Rd
marmap/man/get.box.Rd
marmap/man/diag.bathy.Rd
marmap/man/summary.bathy.Rd
marmap/man/is.bathy.Rd
marmap/man/palette.bathy.Rd
marmap/man/nw.atlantic.coast.Rd
marmap/man/check.bathy.Rd
marmap/man/getNOAA.bathy.Rd
marmap/man/get.transect.Rd
marmap/man/aleutians.Rd
marmap/man/hawaii.Rd
marmap/man/path.profile.Rd
marmap/man/outline.buffer.Rd