Man pages for massiveGST
Competitive Gene Sets Test with the Mann-Whitney-Wilcoxon Test
| cut_by_logit2NES | Trim the table of results. |
| cut_by_NES | Trim the table of results. |
| cut_by_significance | Trim the table of results. |
| geneSets.sim | Compute the similarities between a collection of gene sets. |
| get_geneProfile | Load a gene-profile from a txt file. |
| get_geneSets_from_local_files | Load the gene-sets collection from local gmt files |
| h.all.v2024.1.Hs.symbols.gmt | hallmark gene sets |
| massiveGST | massive Gene-Sets Test with Mann-Whitney-Wilcoxon statistics. |
| massiveORT | A wrapper to fisher.test to get over representation analysis... |
| plot.mGST | Graphical rendering of the enrichment analysis. |
| pre_ranked_list | FGFR3-TACC3 fusion positive gene profile |
| save_as_tsv | Save the results in tab-separeted value file |
| save_as_xls | Save the results in xls file format |
| summary.mGST | Generate summary tables |
| write_geneSets_to_gmt | Save a collection of gene-sets in a .gmt file format. |
