get_geneSets_from_local_files: Load the gene-sets collection from local gmt files
| get_geneSets_from_local_files | R Documentation |
Load the gene-sets collection from local gmt files
Description
Load the gene-sets collection from local gmt files
Usage
get_geneSets_from_local_files(ffiles)Arguments
ffiles |
a character string or a list of a character pointing to local files |
Value
A vector list of gene-sets
Author(s)
Stefano M. Pagnotta
See Also
write_geneSets_to_gmt
Examples
library(massiveGST)
# getting one collection
fname <- system.file("extdata", package="massiveGST")
fname <- file.path(fname, "h.all.v2024.1.Hs.symbols.gmt")
length(geneSets <- get_geneSets_from_local_files(fname))
head(geneSets)
# getting two or more collections
geneSets <- get_geneSets_from_local_files(c(fname, fname))
length(geneSets)
