save_as_xls: Save the results in xls file format

In massiveGST: Competitive Gene Sets Test with the Mann-Whitney-Wilcoxon Test

Save the results in xls file format

Description

Save the data frame coming from the massiveGST function as Excel 2003 (XLS) or Excel 2007 (XLSX) files

Usage

save_as_xls(x, file_name = "massiveGST.xls", ...)

Arguments

x	a data frame of "mGST" class coming from massiveGST function.
file_name	a character value ("massiveGST.xls" as default)
...	Arguments to be passed to methods

Value

No return value.

Author(s)

Stefano M. Pagnotta

See Also

WriteXLS, massiveGST

Examples

library(massiveGST)

# get the gene profile
fname <- system.file("extdata", package="massiveGST")
fname <- file.path(fname, "pre_ranked_list.txt")
geneProfile <- get_geneProfile(fname)

# get the gene-sets
geneSets <- get_geneSets_from_msigdbr(category = "H", what = "gene_symbol")

# run the function
ans <- massiveGST(geneProfile, geneSets, alternative = "two.sided")

# save the results
fname <- file.path(tempdir(), "massiveGST_results.xls")
save_as_xls(ans, file_name = fname)

massiveGST documentation built on March 31, 2023, 8:59 p.m.