Man pages for massiveGST
Competitive Gene Sets Test with the Mann-Whitney-Wilcoxon Test

cut_by_logit2NESTrim the table of results.
cut_by_NESTrim the table of results.
cut_by_significanceTrim the table of results.
geneSets.simCompute the similarities between a collection of gene sets.
get_geneProfileLoad a gene-profile from a txt file.
get_geneSets_from_local_filesLoad the gene-sets collection from local gmt files
get_geneSets_from_msigdbrGet the gene-sets from the msigdbr package.
massiveGSTmassive Gene-Sets Test with Mann-Whitney-Wilcoxon statistics.
massiveORTA wrapper to fisher.test to get over representation analysis...
plot.mGSTGraphical rendering of the enrichment analysis.
pre_ranked_listFGFR3-TACC3 fusion positive gene profile
save_as_tsvSave the results in tab-separeted value file
save_as_xlsSave the results in xls file format
summary.mGSTGenerate summary tables
write_geneSets_to_gmtSave a collection of gene-sets in a .gmt file format.
massiveGST documentation built on March 31, 2023, 8:59 p.m.