medfate: Mediterranean Forest Simulation
Version 0.2.2

Functions to simulate forest dynamics using cohort-based description of vegetation.

AuthorMiquel De Caceres
Date of publication2016-11-11 00:19:41
MaintainerMiquel De Caceres <miquelcaceres@gmail.com>
LicenseGPL (>= 2)
Version0.2.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("medfate")

Popular man pages

defaultSoilParams: Default soil parameters
exampleforest: Example forest stand
extractSFIforest: Extract forest from SFI data
plantvalues: Plant description functions
plot.swb: Displays soil water balance results
SpatialPointsForest: Creates Spatial Forest Classes
SpParamsMED: Parameter values for Mediterranean species
See all...

All man pages Function index File listing

Man pages

defaultControl: Default control parameters for models
defaultSoilParams: Default soil parameters
exampleforest: Example forest stand
examplemeteo: Example daily meteorology data
exampleSPF: Example of spatial points with forest data
extractSFIforest: Extract forest from SFI data
fire.behaviour: Fire behaviour functions
forest: Forest description
forest2swbInput: Input variables for soil water balance
forestvalues: Forest description functions
fuel.properties: Fuel stratification and fuel characteristics
hydraulics: Hydraulic model functions
plantvalues: Plant description functions
plot.swb: Displays soil water balance results
raininterception: Rainfall interception
root: Distribution of fine roots
SFM_metric: Standard fuel models (Albini 1976, Scott & Burgan 2005)
soil: Soil definition
soiltexture: Soil texture functions
spatialForestSummary: Forest and soil summaries over space
SpatialGridForest-class: Class '"SpatialGridForest"'
SpatialPointsForest: Creates Spatial Forest Classes
SpatialPointsForest-class: Class '"SpatialPointsForest"'
speciesvalues: Species description functions
SpParamsMED: Parameter values for Mediterranean species
swb: Soil water balance model
swbfunctions: Soil infiltration and bare soil evaporation
swbgrid: Soil water balance and lateral water discharge
swbpoints: Soil water balance model for spatially-distributed forest...
VerticalProfiles: Vertical profiles

Functions

AIdistribution Source code
AIprofile Source code
EMCSimard Source code
EMCadsorption Source code
EMCdesorption Source code
Egamma Source code
PenmanMonteithPET Source code
SFM_metric Man page
SpParamsMED Man page
SpatialGridForest Man page Source code
SpatialGridForest-class Man page
SpatialPointsForest Man page Source code
SpatialPointsForest-class Man page
checkSpeciesParameters Source code
cohortAbsorbedSWRFraction Source code
criticalFirelineIntensity Source code
defaultControl Man page Source code
defaultSoilParams Man page Source code
doubleEllipseROS Source code
ellipseROS Source code
emptyforest Man page Source code
er Source code
exampleSPF Man page
exampleforest Man page
examplemeteo Man page
extractSFIforest Man page Source code
findFireBrandLoftedHeight Source code
fire.FCCS Man page Source code
fire.Rothermel Man page Source code
fireBrandBurningTimeFromCanopyStructure Source code
fireBrandFallingHeight Source code
fireBrandFlameHeightFromCanopyStructure Source code
forest Man page
forest.BasalArea Man page Source code
forest2swbInput Man page Source code
fuel.FCCS Man page Source code
fuel.Stratification Man page Source code
fuel.WindAdjustmentFactor Man page Source code
fuelConditions Source code
gammds Source code
gdd Source code
genros Source code
hydraulics.E2psiTwoElements Man page Source code
hydraulics.E2psiVanGenuchten Man page Source code
hydraulics.E2psiXylem Man page Source code
hydraulics.EXylem Man page Source code
hydraulics.Ecrit Man page Source code
hydraulics.psiCrit Man page Source code
hydraulics.regulatedPsiTwoElements Man page Source code
hydraulics.regulatedPsiXylem Man page Source code
hydraulics.supplyFunction Man page Source code
hydraulics.vanGenuchtenConductance Man page Source code
hydraulics.xylemConductance Man page Source code
layerCohortFuelLoading Source code
layerFuelAverageCrownLength Source code
layerFuelAverageParameter Source code
layerFuelAverageSpeciesParameter Source code
layerFuelLoading Source code
layerLAI Source code
nfiltrationDay Source code
nterceptionGashDay Source code
parExtinctionProfile Source code
parcohort Source code
parheight Source code
plant.BasalArea Man page Source code
plant.CharacterParameter Man page Source code
plant.Cover Man page Source code
plant.CrownBaseHeight Man page Source code
plant.CrownLength Man page Source code
plant.CrownRatio Man page Source code
plant.Density Man page Source code
plant.EquilibriumLeafLitter Man page Source code
plant.EquilibriumSmallBranchLitter Man page Source code
plant.FoliarBiomass Man page Source code
plant.Fuel Man page Source code
plant.Height Man page Source code
plant.LAI Man page Source code
plant.LargerTreeBasalArea Man page Source code
plant.Parameter Man page Source code
plant.Phytovolume Man page Source code
plant.Species Man page Source code
plant.SpeciesName Man page Source code
plot.swb Man page Source code
plot.swbgrid Man page Source code
print.soil Man page Source code
print.summary.forest Man page Source code
root.conicRS Man page Source code
root.ldrProfile Man page Source code
root.ldrRS Man page Source code
shelteredMidflameWindSpeed Source code
shrubCover Source code
shrubCrownPhytovolume Source code
shrubCrownRatio Source code
shrubFoliarBiomass Source code
shrubFuel Source code
shrubLAI Source code
soil Man page Source code
soil.USDAType Man page Source code
soil.psi2theta Man page Source code
soil.theta2psi Man page Source code
soil.vanGenuchtenParams Man page Source code
spatialForestSummary Man page
spatialForestSummary,SpatialGridForest-method Man page
spatialForestSummary,SpatialPointsForest-method Man page
spatialForestSummary-methods Man page
spatialSoilSummary Man page
spatialSoilSummary,SpatialGridForest-method Man page
spatialSoilSummary,SpatialPointsForest-method Man page
spatialSoilSummary-methods Man page
species.BasalArea Man page Source code
summary.forest Man page Source code
summary.swb Man page Source code
swb Man page Source code
swb.RainInterception Man page Source code
swb.SoilEvaporation Man page Source code
swb.SoilInfiltration Man page Source code
swbDay1 Source code
swbDay2 Source code
swbInput Man page Source code
swbgrid Man page Source code
swbgridDay Source code
swbpoints Man page Source code
swrExtinctionProfile Source code
swrheight Source code
totalFirebrandLoftingTime Source code
totalGasFlowPersistenceTime Source code
translateSpeciesCodes Man page Source code
treeBasalArea Source code
treeFoliarBiomass Source code
treeFuel Source code
treeLAI Source code
unshelteredMidflameWindSpeed Source code
vprofile.FuelBulkDensity Man page Source code
vprofile.LeafAreaDensity Man page Source code
vprofile.PARExtinction Man page Source code
vprofile.SWRExtinction Man page Source code
vprofile.WindExtinction Man page Source code
willBurnWhenHitFloor Source code
windExtinctionProfile Source code
windSpeedAtCanopyHeight Source code
windSpeedAtHeightOverCanopy Source code
woodyFuelProfile Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/Hydraulics.Rnw
inst/doc/SoilWaterBalance.Rnw
inst/doc/RootSystems.R
inst/doc/RootSystems.Rnw
inst/doc/Hydraulics.R
inst/doc/SoilWaterBalance.pdf
inst/doc/FireBehaviour.Rnw
inst/doc/Hydraulics.pdf
inst/doc/RootSystems.pdf
inst/doc/SoilWaterBalance.R
inst/doc/FireBehaviour.R
inst/doc/FireBehaviour.pdf
src
src/windextinction.cpp
src/hydraulics.h
src/forestutils.h
src/PenmanMonteith.h
src/hydraulics.cpp
src/fuelstructure.h
src/soil.h
src/fuelstructure.cpp
src/forestutils.cpp
src/soil.cpp
src/firebehaviour.cpp
src/windextinction.h
src/fuelmoisture.h
src/lightextinction.h
src/fireutils.cpp
src/swb.h
src/swb.cpp
src/PenmanMonteith.cpp
src/fireutils.h
src/fuelmoisture.cpp
src/RcppExports.cpp
src/lightextinction.cpp
NAMESPACE
data
data/exampleforest.rda
data/exampleSPF.rda
data/examplemeteo.rda
data/SFM_metric.rda
data/SpParamsMED.rda
R
R/swbgrid.R
R/defaultSoilParams.R
R/summary.forest.R
R/VerticalProfiles.R
R/DefineSpatialClasses.R
R/summary.swb.R
R/plot.swbgrid.R
R/swbpoints.R
R/RcppExports.R
R/extractSFIforest.R
R/swb.functions.R
R/SpatialPointsForest.R
R/translateSpeciesCodes.R
R/SpatialGridForest.R
R/plot.swb.R
R/defaultControl.R
R/print.soil.R
R/emptyforest.R
vignettes
vignettes/Hydraulics.Rnw
vignettes/SoilWaterBalance.Rnw
vignettes/Hydraulics-004.pdf
vignettes/RootSystems.Rnw
vignettes/FireBehaviour.Rnw
vignettes/Hydraulics-029.pdf
vignettes/FireBehaviour-004.pdf
vignettes/SoilWaterBalance-002.pdf
MD5
build
build/vignette.rds
DESCRIPTION
man
man/plantvalues.Rd
man/soiltexture.Rd
man/forest.Rd
man/SpParamsMED.Rd
man/swb.Rd
man/forestvalues.Rd
man/raininterception.Rd
man/forest2swbInput.Rd
man/swbfunctions.Rd
man/exampleforest.Rd
man/swbpoints.Rd
man/plot.swb.Rd
man/speciesvalues.Rd
man/SpatialGridForest-class.Rd
man/fire.behaviour.Rd
man/root.Rd
man/hydraulics.Rd
man/examplemeteo.Rd
man/SpatialPointsForest.Rd
man/fuel.properties.Rd
man/swbgrid.Rd
man/exampleSPF.Rd
man/soil.Rd
man/defaultSoilParams.Rd
man/spatialForestSummary.Rd
man/defaultControl.Rd
man/VerticalProfiles.Rd
man/SFM_metric.Rd
man/SpatialPointsForest-class.Rd
man/extractSFIforest.Rd
medfate documentation built on May 20, 2017, 1:57 a.m.

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