API for medfate
Mediterranean Forest Simulation

Global functions
.EMCSimard Source code
.EMCadsorption Source code
.EMCdesorption Source code
.Egamma Source code
.Egammainv Source code
.LAIdistribution Source code
.LAIdistributionVectors Source code
.LAIprofile Source code
.LAIprofileVectors Source code
.averageByLAISpecies Source code
.averageBySpecies Source code
.averageSubdailyBySpecies Source code
.betacf Source code
.checkSpeciesParameters Source code
.cloneInput Source code
.createCutShrubTable Source code
.createCutTreeTable Source code
.createDeadShrubTable Source code
.createDeadTreeTable Source code
.createShrubTable Source code
.createTreeTable Source code
.criticalFirelineIntensity Source code
.defineASPWBDailyOutput Source code
.defineGrowthDailyOutput Source code
.defineSPWBDailyOutput Source code
.dominantTreeDiameter Source code
.dominantTreeHeight Source code
.droughtstress_sim Source code
.extractSubdaily Source code
.fillASPWBDailyOutput Source code
.fillGrowthDailyOutput Source code
.fillSPWBDailyOutput Source code
.firehaz_sim Source code
.forest_plot_choices Source code
.fuelConditions Source code
.gammds Source code
.gammln Source code
.gdd Source code
.getCohortBiomassBalanceGROWTHPlotTypes Source code
.getDailyGROWTHPlotTypes Source code
.getDailyPWBPlotTypes Source code
.getDailySPWBPlotTypes Source code
.getEnergyPlotTypes Source code
.getGrowthMortalityGROWTHPlotTypes Source code
.getLabileGROWTHPlotTypes Source code
.getPlantPlotTypes Source code
.getSoilPlotTypes Source code
.getStandPlotTypes Source code
.getStructuralGROWTHPlotTypes Source code
.getSubdailyEnergyBalancePlotTypes Source code
.getSubdailyGROWTHPlotTypes Source code
.getSubdailyLabilePlotTypes Source code
.getSubdailyPlantPlotTypes Source code
.getSubdailySPWBPlotTypes Source code
.getSubdailySoilPlotTypes Source code
.getSubdailySunlitShadePlotTypes Source code
.getSunlitShadePlotTypes Source code
.getUniqueDailyGROWTHPlotTypes Source code
.getUniqueFORDYNPlotTypes Source code
.getWaterBalancePlotTypes Source code
.getWeatherDates Source code
.getYLab Source code
.growthInput Source code
.hartBeckingIndex Source code
.hydrology_interceptionGashDay Source code
.hydrology_interceptionLiuDay Source code
.incbeta Source code
.incgam Source code
.invincgam Source code
.layerCohortFuelLoading Source code
.layerFuelAverageCrownLength Source code
.layerFuelAverageParameter Source code
.layerFuelAverageSpeciesParameter Source code
.layerFuelLoading Source code
.layerLAI Source code
.mergeVectorOfMatrices Source code
.modifyInputParam Source code
.modifySoilLayerParam Source code
.multiple_dynamics Source code
.multiple_dynamics_range Source code
.multiple_dynamics_subdaily Source code
.multiple_dynamics_subdaily_sunlit_shade Source code
.multiple_subday_dynamics Source code
.multiple_subday_dynamics_sunlit_shade Source code
.multiple_x Source code
.multiple_y Source code
.multiplyInputParam Source code
.nextYearForest Source code
.onAttach Source code
.parExtinctionProfile Source code
.paramsBelow Source code
.parcohort Source code
.parheight Source code
.plot_biomass Source code
.plot_carbon Source code
.plot_energybalance Source code
.plot_plant_om Source code
.plot_plant_om_sum Source code
.plot_soil Source code
.plot_stand Source code
.plot_temperature Source code
.plot_wb Source code
.plotsubdaily Source code
.quadraticMeanTreeDiameter Source code
.resistances_sim Source code
.rootDistribution Source code
.shelteredMidflameWindSpeed Source code
.shinyplot_day Source code
.shinyplot_sim Source code
.shrubCover Source code
.shrubCrownRatio Source code
.shrubPhytovolume Source code
.single_dynamics Source code
.single_subday_dynamics Source code
.speciesCharacterParameterFromSpIndex Source code
.speciesNumericParameterFromSpIndex Source code
.spwbInput Source code
.sumBySpecies Source code
.sumSubdailyBySpecies Source code
.summarizeCohorts Source code
.summarizeSpecies Source code
.summarizeStand Source code
.summarysim Source code
.swrExtinctionProfile Source code
.swrheight Source code
.temporalSummary Source code
.treeBasalArea Source code
.unshelteredMidflameWindSpeed Source code
.updateBelow Source code
.windExtinctionProfile Source code
.windSpeedAtCanopyHeight Source code
.windSpeedAtHeightOverCanopy Source code
.woodyFuelProfile Source code
.wue_sim Source code
SFM_metric Man page
SpParams Man page
SpParamsDefinition Man page
SpParamsMED Man page
aspwb Man page Source code
aspwbInput Man page Source code
aspwb_day Man page Source code
biophysics Man page
biophysics_irradianceToPhotonFlux Man page Source code
biophysics_leafTemperature Man page Source code
biophysics_leafTemperature2 Man page Source code
biophysics_leafVapourPressure Man page Source code
biophysics_radiationDiurnalPattern Man page Source code
biophysics_temperatureDiurnalPattern Man page Source code
biophysics_waterDynamicViscosity Man page Source code
carbon Man page
carbon_carbonCompartments Man page Source code
carbon_leafStarchCapacity Man page Source code
carbon_leafStructuralBiomass Man page Source code
carbon_osmoticWaterPotential Man page Source code
carbon_relativeSapViscosity Man page Source code
carbon_sapwoodStarchCapacity Man page Source code
carbon_sapwoodStructuralBiomass Man page Source code
carbon_sapwoodStructuralLivingBiomass Man page Source code
carbon_sugarConcentration Man page Source code
carbon_sugarStarchDynamicsLeaf Man page Source code
carbon_sugarStarchDynamicsStem Man page Source code
defaultControl Man page Source code
defaultManagementArguments Man page Source code
defaultManagementFunction Man page Source code
defaultSoilParams Man page Source code
droughtStress Man page Source code
emptyforest Man page Source code
evaluation Man page
evaluation_metric Man page Source code
evaluation_plot Man page Source code
evaluation_stats Man page Source code
evaluation_table Man page Source code
exampleforest Man page
exampleforest2 Man page
examplemeteo Man page
exampleobs Man page
extract Man page Source code
fireHazard Man page Source code
fire_FCCS Man page Source code
fire_Rothermel Man page Source code
fire_barkThermalDiffusivity Man page Source code
fire_behaviour Man page
fire_leafThermalFactor Man page Source code
fire_necrosisCriticalTemperature Man page Source code
fire_necrosisHeight Man page Source code
fire_plumeTemperature Man page Source code
fire_radialBoleNecrosis Man page Source code
fire_severity Man page
fordyn Man page Source code
forest Man page
forest2aboveground Man page Source code
forest2belowground Man page Source code
forest2growthInput Man page Source code
forest2spwbInput Man page Source code
forest_mapShrubTable Man page Source code
forest_mapTreeTable Man page Source code
forest_mapWoodyTables Man page Source code
forest_mergeShrubs Man page Source code
forest_mergeTrees Man page Source code
forest_reduceToDominant Man page Source code
forest_simplification Man page
fuel_FCCS Man page Source code
fuel_properties Man page
fuel_stratification Man page Source code
fuel_windAdjustmentFactor Man page Source code
growth Man page Source code
growthInput Man page Source code
growth_day Man page Source code
herb_LAI Man page Source code
herb_foliarBiomass Man page Source code
herb_fuelLoading Man page Source code
herb_values Man page
hydraulics_E2psiAboveground Man page Source code
hydraulics_E2psiBelowground Man page Source code
hydraulics_E2psiNetwork Man page Source code
hydraulics_E2psiTwoElements Man page Source code
hydraulics_E2psiVanGenuchten Man page Source code
hydraulics_E2psiXylem Man page Source code
hydraulics_E2psiXylemUp Man page Source code
hydraulics_ECrit Man page Source code
hydraulics_EVanGenuchten Man page Source code
hydraulics_EXylem Man page Source code
hydraulics_K2Psi Man page Source code
hydraulics_averagePsi Man page Source code
hydraulics_averageRhizosphereResistancePercent Man page Source code
hydraulics_conductancefunctions Man page
hydraulics_correctConductanceForViscosity Man page Source code
hydraulics_defoliation Man page
hydraulics_findRhizosphereMaximumConductance Man page Source code
hydraulics_initSperryNetworks Man page Source code
hydraulics_maximumSoilPlantConductance Man page Source code
hydraulics_maximumStemHydraulicConductance Man page Source code
hydraulics_proportionDefoliationSigmoid Man page Source code
hydraulics_proportionDefoliationWeibull Man page Source code
hydraulics_psi2K Man page Source code
hydraulics_psi2Weibull Man page Source code
hydraulics_psiCrit Man page Source code
hydraulics_referenceConductivityHeightFactor Man page Source code
hydraulics_regulatedPsiTwoElements Man page Source code
hydraulics_regulatedPsiXylem Man page Source code
hydraulics_rootxylemConductanceProportions Man page Source code
hydraulics_scalingconductance Man page
hydraulics_soilPlantResistances Man page Source code
hydraulics_supplyFunctionAboveground Man page Source code
hydraulics_supplyFunctionBelowground Man page Source code
hydraulics_supplyFunctionNetwork Man page Source code
hydraulics_supplyFunctionOneXylem Man page Source code
hydraulics_supplyFunctionPlot Man page Source code
hydraulics_supplyFunctionThreeElements Man page Source code
hydraulics_supplyFunctionTwoElements Man page Source code
hydraulics_supplyfunctions Man page
hydraulics_taperFactorSavage Man page Source code
hydraulics_terminalConduitRadius Man page Source code
hydraulics_vanGenuchtenConductance Man page Source code
hydraulics_vulnerabilityCurvePlot Man page Source code
hydraulics_xylemConductance Man page Source code
hydraulics_xylemPsi Man page Source code
hydrology_herbaceousTranspiration Man page Source code
hydrology_infiltration Man page
hydrology_infiltrationAmount Man page Source code
hydrology_infiltrationBoughton Man page Source code
hydrology_infiltrationGreenAmpt Man page Source code
hydrology_infiltrationRepartition Man page Source code
hydrology_interception Man page
hydrology_interceptionPlot Man page Source code
hydrology_rainInterception Man page Source code
hydrology_rainfallIntensity Man page Source code
hydrology_snowMelt Man page Source code
hydrology_soilEvaporation Man page Source code
hydrology_soilEvaporationAmount Man page Source code
hydrology_soilWaterBalance Man page Source code
hydrology_verticalInputs Man page
hydrology_waterInputs Man page Source code
initSureauNetworks Man page Source code
light_PARcohort Man page Source code
light_PARground Man page Source code
light_SWRground Man page Source code
light_advanced Man page
light_basic Man page
light_cohortAbsorbedSWRFraction Man page Source code
light_cohortSunlitShadeAbsorbedRadiation Man page Source code
light_directionalExtinctionCoefficient Man page Source code
light_instantaneousLightExtinctionAbsortion Man page Source code
light_layerDiffuseIrradianceFraction Man page Source code
light_layerDirectIrradianceFraction Man page Source code
light_layerSunlitFraction Man page Source code
light_leafAngleBetaParameters Man page Source code
light_leafAngleCDF Man page Source code
light_longwaveRadiationSHAW Man page Source code
medfate Man page
medfate-package Man page
modelInput Man page
modifyCohortParams Man page Source code
modifyInputParams Man page Source code
modifyParams Man page
modifySpParams Man page Source code
moisture Man page
moisture_apoplasticPsi Man page Source code
moisture_apoplasticRWC Man page Source code
moisture_leafWaterCapacity Man page Source code
moisture_pressureVolumeCurvePlot Man page Source code
moisture_sapwoodWaterCapacity Man page Source code
moisture_symplasticPsi Man page Source code
moisture_symplasticRWC Man page Source code
moisture_tissueRWC Man page Source code
moisture_turgorLossPoint Man page Source code
mortality_dailyProbability Man page Source code
multiple_runs Man page Source code
optimization Man page
optimization_evaluation_function Man page Source code
optimization_evaluation_multicohort_function Man page Source code
optimization_function Man page Source code
optimization_multicohort_function Man page Source code
pheno_leafDevelopmentStatus Man page Source code
pheno_leafSenescenceStatus Man page Source code
pheno_updateLeaves Man page Source code
pheno_updatePhenology Man page Source code
photo Man page
photo_GammaTemp Man page Source code
photo_JmaxTemp Man page Source code
photo_KmTemp Man page Source code
photo_VmaxTemp Man page Source code
photo_electronLimitedPhotosynthesis Man page Source code
photo_leafPhotosynthesisFunction Man page Source code
photo_leafPhotosynthesisFunction2 Man page Source code
photo_multilayerPhotosynthesisFunction Man page Source code
photo_photosynthesis Man page Source code
photo_photosynthesisBaldocchi Man page Source code
photo_rubiscoLimitedPhotosynthesis Man page Source code
photo_sunshadePhotosynthesisFunction Man page Source code
plant_ID Man page Source code
plant_LAI Man page Source code
plant_basalArea Man page Source code
plant_characterParameter Man page Source code
plant_cover Man page Source code
plant_crownBaseHeight Man page Source code
plant_crownLength Man page Source code
plant_crownRatio Man page Source code
plant_density Man page Source code
plant_equilibriumLeafLitter Man page Source code
plant_equilibriumSmallBranchLitter Man page Source code
plant_foliarBiomass Man page Source code
plant_fuelLoading Man page Source code
plant_height Man page Source code
plant_individualArea Man page Source code
plant_largerTreeBasalArea Man page Source code
plant_parameter Man page Source code
plant_phytovolume Man page Source code
plant_species Man page Source code
plant_speciesName Man page Source code
plant_values Man page
plant_water Man page Source code
plot.fordyn Man page Source code
plot.forest Man page Source code
plot.growth Man page Source code
plot.growth_day Man page Source code
plot.pwb Man page Source code
plot.pwb_day Man page Source code
plot.spwb Man page Source code
plot.spwb_day Man page Source code
poblet_trees Man page
print.summary.forest Man page Source code
pwb Man page Source code
regeneration Man page
regeneration_recruitment Man page Source code
regeneration_resprouting Man page Source code
regeneration_seedmortality Man page Source code
regeneration_seedproduction Man page Source code
regeneration_seedrefill Man page Source code
resetInputs Man page Source code
resistances Man page Source code
root Man page
root_coarseRootLengths Man page Source code
root_coarseRootLengthsFromVolume Man page Source code
root_coarseRootSoilVolume Man page Source code
root_coarseRootSoilVolumeFromConductance Man page Source code
root_conicDistribution Man page Source code
root_fineRootAreaIndex Man page Source code
root_fineRootBiomass Man page Source code
root_fineRootHalfDistance Man page Source code
root_fineRootRadius Man page Source code
root_fineRootSoilVolume Man page Source code
root_horizontalProportions Man page Source code
root_individualRootedGroundArea Man page Source code
root_ldrDistribution Man page Source code
root_rhizosphereMaximumConductance Man page Source code
root_specificRootSurfaceArea Man page Source code
semi_implicit_integration Man page Source code
shinyplot Man page Source code
shinyplot.fordyn Man page Source code
shinyplot.forest Man page Source code
shinyplot.growth Man page Source code
shinyplot.growth_day Man page Source code
shinyplot.pwb Man page Source code
shinyplot.pwb_day Man page Source code
shinyplot.spwb Man page Source code
shinyplot.spwb_day Man page Source code
shrub2forest Man page Source code
soil Man page Source code
soil_USDAType Man page Source code
soil_campbellParamsClappHornberger Man page Source code
soil_capacitance Man page Source code
soil_conductivity Man page Source code
soil_psi Man page Source code
soil_psi2cVG Man page Source code
soil_psi2kVG Man page Source code
soil_psi2thetaSX Man page Source code
soil_psi2thetaVG Man page Source code
soil_redefineLayers Man page Source code
soil_retentionCurvePlot Man page Source code
soil_rockWeight2Volume Man page Source code
soil_saturatedConductivitySX Man page Source code
soil_saturatedWaterDepth Man page Source code
soil_temperatureChange Man page Source code
soil_temperatureGradient Man page Source code
soil_texture Man page
soil_thermalCapacity Man page Source code
soil_thermalConductivity Man page Source code
soil_thermodynamics Man page
soil_theta Man page Source code
soil_theta2psiSX Man page Source code
soil_theta2psiVG Man page Source code
soil_thetaFC Man page Source code
soil_thetaSAT Man page Source code
soil_thetaSATSX Man page Source code
soil_thetaWP Man page Source code
soil_unsaturatedConductivitySX Man page Source code
soil_vanGenuchtenParamsCarsel Man page Source code
soil_vanGenuchtenParamsToth Man page Source code
soil_water Man page Source code
soil_waterExtractable Man page Source code
soil_waterFC Man page Source code
soil_waterPsi Man page Source code
soil_waterSAT Man page Source code
soil_waterWP Man page Source code
species_LAI Man page Source code
species_basalArea Man page Source code
species_characterParameter Man page Source code
species_cover Man page Source code
species_density Man page Source code
species_foliarBiomass Man page Source code
species_fuelLoading Man page Source code
species_parameter Man page Source code
species_values Man page
spwb Man page Source code
spwbInput Man page Source code
spwb_day Man page Source code
stand_LAI Man page Source code
stand_basalArea Man page Source code
stand_dominantTreeDiameter Man page Source code
stand_dominantTreeHeight Man page Source code
stand_dominantTreeSpecies Man page Source code
stand_foliarBiomass Man page Source code
stand_fuelLoading Man page Source code
stand_hartBeckingIndex Man page Source code
stand_meanTreeHeight Man page Source code
stand_quadraticMeanTreeDiameter Man page Source code
stand_shrubVolume Man page Source code
stand_treeDensity Man page Source code
stand_values Man page
summary.fordyn Man page Source code
summary.forest Man page Source code
summary.growth Man page Source code
summary.pwb Man page Source code
summary.soil Man page Source code
summary.spwb Man page Source code
sureau_ecos Man page
trait_family_means Man page
transp_maximumTranspirationModel Man page Source code
transp_modes Man page
transp_profitMaximization Man page Source code
transp_stomatalRegulationPlot Man page Source code
transp_stomatalregulation Man page
transp_transpirationGranier Man page Source code
transp_transpirationSperry Man page Source code
transp_transpirationSureau Man page Source code
tree2forest Man page Source code
vprofile_PARExtinction Man page Source code
vprofile_SWRExtinction Man page Source code
vprofile_fuelBulkDensity Man page Source code
vprofile_leafAreaDensity Man page Source code
vprofile_rootDistribution Man page Source code
vprofile_windExtinction Man page Source code
waterUseEfficiency Man page Source code
wind Man page
wind_canopyTurbulence Man page Source code
wind_canopyTurbulenceModel Man page Source code
woodformation Man page
woodformation_growRing Man page Source code
woodformation_initRing Man page Source code
woodformation_relativeExpansionRate Man page Source code
woodformation_relativeGrowthRate Man page Source code
woodformation_temperatureEffect Man page Source code
medfate documentation built on Sept. 11, 2024, 7:32 p.m.