Man pages for medfate
Mediterranean Forest Simulation
| biophysics | Physical and biophysical utility functions |
| carbon | Carbon-related functions |
| defaultControl | Control parameters for simulation models |
| defaultManagementFunction | Default forest management actions |
| defaultSoilParams | Default soil parameters |
| droughtStress | Drought stress indicators |
| evaluation | Evaluation of simulations results |
| exampleforest | Example forest stands |
| examplemeteo | Example daily meteorology data |
| exampleobs | Example observed data |
| extractSubdaily | Extracts subdaily output |
| fire_behaviour | Fire behaviour functions |
| fireHazard | Fire hazard |
| fire_severity | Fire severity functions |
| fordyn | Forest dynamics |
| forest | Forest description |
| forest_mergeTrees | Forest merge functions |
| fuel_properties | Fuel stratification and fuel characteristics |
| growth | Forest growth |
| herb_values | Herbaceous description functions |
| hydraulics_conductancefunctions | Hydraulic confuctance functions |
| hydraulics_scalingconductance | Scaling from conductivity to conductance |
| hydraulics_supplyfunctions | Hydraulic supply functions |
| hydrology_interception | Rainfall interception |
| hydrology_soil | Soil infiltration, percolation and bare soil evaporation |
| hydrology_verticalInputs | Soil vertical inputs |
| light | Radiation transfer functions |
| medfate-package | medfate: Mediterranean Forest Simulation |
| modelInput | Input for simulation models |
| modifyParams | Modify parameters |
| moisture | Tissue moisture functions |
| mortality_dailyProbability | Mortality |
| optimization | Multiple model runs and function factories for optimization... |
| pheno_updateLeaves | Leaf phenology |
| photo | Photosynthesis submodel functions |
| plant_values | Woody plant cohort description functions |
| plot.forest | Plot forest attributes |
| plot.spwb | Plots simulation results |
| plot.spwb_day | Plots simulation results for one day |
| regeneration | Plant regeneration |
| resetInputs | Reset simulation inputs |
| resistances | Soil-plant resistances |
| root | Root functions |
| SFM_metric | Standard fuel models (Albini 1976, Scott & Burgan 2005) |
| shinyplot | Shiny app with interactive plots |
| soil | Soil initialization |
| soil_texture | Soil texture and hydraulics |
| soil_thermodynamics | Soil thermodynamic functions |
| species_values | Species description functions |
| SpParams | Data tables with species parameter definition and values for... |
| spwb | Soil-plant water balance |
| spwb_day | Single-day simulation |
| stand_values | Stand values |
| summary.spwb | Summarize simulation results |
| sureau_ecos | Sureau-ECOS inner functions for testing only |
| TaxonTraitMeans | Parameter average values |
| transp_maximumTranspirationModel | Maximum transpiration vs. LAI |
| transp_modes | Transpiration modes |
| transp_stomatalregulation | Stomatal regulation |
| vprofile_leafAreaDensity | Vertical profiles |
| waterUseEfficiency | Water use efficiency |
| wind | Models for canopy turbulence |
| woodformation | Wood formation |
