metaMA: Meta-analysis for MicroArrays

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Combines either p-values or modified effect sizes from different studies to find differentially expressed genes

Author
Guillemette Marot
Date of publication
2015-01-28 23:20:03
Maintainer
Guillemette Marot <guillemette.marot@inria.fr>
License
GPL
Version
3.1.2

View on CRAN

Man pages

calcfit2Diffrep
Empirical Bayes statistics from limma analysis with unpaired...
directEScombi
Direct effect size combination
directpvalcombi
Direct p-value combination
effectsize
Calculates effect sizes from given t or moderated t...
EScombination
Effect size combination for unpaired data
EScombination.paired
Effect size combination for paired data
IDDIRR
Integration-driven Discovery and Integration-driven Revision...
metaMA-package
Meta-analysis for MicroArrays
pvalcombination
P-value combination for unpaired data
pvalcombination.paired
P-value combination for paired data
row.ttest.stat
Row t-tests
row.ttest.statp
Row paired t-tests
rowVars
Row variance of an array
Singhdata
Singh dataset

Files in this package

metaMA
metaMA/inst
metaMA/inst/CITATION
metaMA/inst/NEWS
metaMA/inst/doc
metaMA/inst/doc/metaMA.Rnw
metaMA/inst/doc/metaMA.pdf
metaMA/inst/doc/metaMA.R
metaMA/NAMESPACE
metaMA/data
metaMA/data/Singhdata.rda
metaMA/data/datalist
metaMA/R
metaMA/R/directpvalcombi.R
metaMA/R/EScombination.R
metaMA/R/directEScombi.R
metaMA/R/pvalcombination.paired.R
metaMA/R/calcfit2Diffrep.R
metaMA/R/EScombination.paired.R
metaMA/R/row.ttest.stat.R
metaMA/R/row.ttest.statp.R
metaMA/R/rowVars.R
metaMA/R/IDDIRR.R
metaMA/R/effectsize.R
metaMA/R/pvalcombination.R
metaMA/vignettes
metaMA/vignettes/metaMA.Rnw
metaMA/vignettes/metaMA.bib
metaMA/MD5
metaMA/build
metaMA/build/vignette.rds
metaMA/DESCRIPTION
metaMA/man
metaMA/man/metaMA-package.Rd
metaMA/man/EScombination.Rd
metaMA/man/directEScombi.Rd
metaMA/man/directpvalcombi.Rd
metaMA/man/row.ttest.stat.Rd
metaMA/man/calcfit2Diffrep.Rd
metaMA/man/rowVars.Rd
metaMA/man/effectsize.Rd
metaMA/man/EScombination.paired.Rd
metaMA/man/IDDIRR.Rd
metaMA/man/pvalcombination.paired.Rd
metaMA/man/row.ttest.statp.Rd
metaMA/man/Singhdata.Rd
metaMA/man/pvalcombination.Rd