ambiguous_synonyms: Get patterns for ambiguous taxa

In metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Get patterns for ambiguous taxa

Description

This function stores the regex patterns for ambiguous taxa.

Usage

ambiguous_synonyms(
  unknown = TRUE,
  uncultured = TRUE,
  regex = TRUE,
  case_variations = FALSE
)

Arguments

unknown	If TRUE, include names that suggest they are placeholders for unknown taxa (e.g. "unknown ...").
uncultured	If TRUE, include names that suggest they are assigned to uncultured organisms (e.g. "uncultured ...").
regex	If TRUE, includes regex syntax to make matching things like spaces more robust.
case_variations	If TRUE, include variations of letter case.

metacoder documentation built on April 4, 2023, 9:08 a.m.