database_list: Database list

In metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Database list

Description

The list of known databases. Not currently used much, but will be when we add more check for taxon IDs and taxon ranks from particular databases.

Usage

database_list

Format

An object of class list of length 8.

Details

List of databases with pre-filled details, where each has the format:

• url: A base URL for the database source.

• description: Description of the database source.

• id regex: identifier regex.

See Also

[taxon_database]

Examples

database_list
database_list$ncbi
database_list$ncbi$name
database_list$ncbi$description
database_list$ncbi$url

metacoder documentation built on April 4, 2023, 9:08 a.m.