correct_taxon_names: Look up official names from potentially misspelled names
In metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data
View source: R/old_taxa--taxmap--parsers.R
correct_taxon_names R Documentation
Look up official names from potentially misspelled names
Description
Look up official names from potentially misspelled names using Global Names
Resolver (GNR). If a result from the chosen database is present, then it is
used, otherwise the NCBI result is used and if that does not exist, then the
first result is used. Names with no match will return NA.
Usage
correct_taxon_names(names, database = "ncbi")
Arguments
names
Potentially misspelled taxon names
database
The database the names are being looked up for. If 'NULL', do
not consider database.
Value
vector of names
metacoder documentation built on April 4, 2023, 9:08 a.m.
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View source: R/old_taxa--taxmap--parsers.R
| correct_taxon_names | R Documentation |
Look up official names from potentially misspelled names
Description
Look up official names from potentially misspelled names using Global Names Resolver (GNR). If a result from the chosen database is present, then it is used, otherwise the NCBI result is used and if that does not exist, then the first result is used. Names with no match will return NA.
Usage
correct_taxon_names(names, database = "ncbi")
Arguments
names |
Potentially misspelled taxon names |
database |
The database the names are being looked up for. If 'NULL', do not consider database. |
Value
vector of names
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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