plot.hillsfile: Plot hillsfile object

In metadynminer: Tools to Read, Analyze and Visualize Metadynamics HILLS Files from 'Plumed'

Plot hillsfile object

Description

'plot.hillsfile' plots hillsfile object. For a hillsfile with one collective variable it plots its evolution. For a hillsfile with two collective variables it plots CV1 vs. CV2.

Usage

## S3 method for class 'hillsfile'
plot(x, ignoretime = FALSE, xlab = NULL,
  ylab = NULL, xlim = NULL, ylim = NULL, main = NULL, sub = NULL,
  pch = 1, col = "black", bg = "red", cex = 1, asp = NULL,
  lwd = 1, axes = TRUE, ...)

Arguments

x	hillsfile object.
ignoretime	time in the first column of the HILLS file will be ignored.
xlab	a title for the x axis: see 'title'.
ylab	a title for the y axis: see 'title'.
xlim	numeric vector of length 2, giving the x coordinates range.
ylim	numeric vector of length 2, giving the y coordinates range.
main	an overall title for the plot: see 'title'.
sub	a sub title for the plot: see 'title'.
pch	plotting 'character', i.e., symbol to use. See 'points'.
col	color code or name, see 'par'.
bg	background (fill) color for the open plot symbols given by 'pch = 21:25'.
cex	character (or symbol) expansion: a numerical vector. This works as a multiple of 'par("cex")'.
asp	the y/x aspect ratio, see 'plot.window'.
lwd	line width for drawing symbols see 'par'.
axes	a logical value indicating whether both axes should be drawn on the plot.
...	further arguments passed to or from other methods.

Examples

plot(acealanme)

metadynminer documentation built on April 14, 2022, 5:06 p.m.