plotheights.hillsfile: Plot evolution of heights of hills in hillsfile object

In metadynminer: Tools to Read, Analyze and Visualize Metadynamics HILLS Files from 'Plumed'

Plot evolution of heights of hills in hillsfile object

Description

'plotheights.hillsfile' plots evolution of heights of hills. In well tempered metadynamics hill heights decrees with flooding of the free energy surface. Evolution of heights may be useful to evaluate convergence of the simulation.

Usage

## S3 method for class 'hillsfile'
plotheights(hills, ignoretime = FALSE, xlab = NULL,
  ylab = NULL, xlim = NULL, ylim = NULL, main = NULL, sub = NULL,
  col = "black", asp = NULL, lwd = 1, axes = TRUE)

Arguments

hills	hillsfile object.
ignoretime	time in the first column of the HILLS file will be ignored.
xlab	a title for the x axis: see 'title'.
ylab	a title for the y axis: see 'title'.
xlim	numeric vector of length 2, giving the x coordinates range.
ylim	numeric vector of length 2, giving the y coordinates range.
main	an overall title for the plot: see 'title'.
sub	a sub title for the plot: see 'title'.
col	color code or name, see 'par'.
asp	the y/x aspect ratio, see 'plot.window'.
lwd	line width for drawing symbols see 'par'.
axes	a logical value indicating whether both axes should be drawn on the plot.

Examples

plotheights(acealanme)

metadynminer documentation built on April 14, 2022, 5:06 p.m.