replicate_phyloMeta1.3: Replicate phylogeneic meta-analysis results and summaries...

In metagear: Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis

Description

Replicate phylogenetic meta-analysis results and summaries from Lajeunesse (2011) software 'phyloMeta' 1.3. Currently does not fully replicate all functionality.

Usage

replicate_phyloMeta1.3(model, weights, data, phylogenyFile)

Arguments

model	A two-sided linear formula object describing the model, with the response (effect sizes) on the left of a ~ operator and the moderator variables, separated by +, :, * operators, on the right. NOTE: phyloMeta was limited to analyses with a single moderator variable. This function currently supports only numerical categorical moderators.
weights	A vector of effect size variances that will be used as weights for the meta-analysis.
data	A data frame containing the variables named in model and weights and species names (names must be exact as specified in phylogeny).
phylogenyFile	A text file containing a NEWICK phylogeny. The number of species must be same as (k) number of effect sizes in data.

References

Lajeunesse, M.J. (2011) phyloMeta: a program for phylogenetic comparative analyses with meta-analysis. Bioinformatics 27, 2603-2604.

metagear documentation built on Feb. 15, 2021, 5:09 p.m.