export_robject: export_robject

In metaprotr: Metaproteomics Post-Processing Analysis

Description

Exports one of the dataframes present in a "metaproteome_object" or in "spectral_count_object". The export extensions can be RDATA or RDS.

Usage

export_robject(entry_object, data_exported, format_data, force = FALSE)

Arguments

entry_object	A "metaproteome_object" or a "spectral_count_object" with similar format to that generated with the functions "load_protspeps" or "getsc_specific", respectively.
data_exported	Character indicating the type of data to be exported from a "metaproteome_object" or a "spectral_count_object". The possible options are: i) "proteins", ii) "peptides", iii) "pepProts", iv) "spectral", v) "spectral_percent", vi) "metadata".
format_data	Character indicating the file extension, this can be either "RDATA" or "RDS".
force	Logic value set at FALSE by default in order to ask permission to create object in the workstation of the user.

Value

A file with the extension "RDATA" or "RDS" containing the information from the selected dataframe from a "metaproteome_object" or a "spectral_count_object".

Examples

data(fecal_waters)
export_robject(fecal_waters, "pepProts", "rdata")

data(species_fw)
export_robject(species_fw, "spectral", "rds")

metaprotr documentation built on Feb. 5, 2021, 9:06 a.m.