inspect_sample_elements: inspect_sample_elements

In metaprotr: Metaproteomics Post-Processing Analysis

Description

Displays a graph that indicates the number of common elements from a "spectral_count_object" (peptides, subgroups, groups or taxonomic entities) per sample. This function is useful to distinguish heterogeneity between samples in an experimental design.

Usage

inspect_sample_elements(spectral_count_object, force = FALSE)

Arguments

spectral_count_object	List defined as "spectral_count_object" containing dataframes with abundance expressed as spectral counts. The spectral data can be organized by peptides, subgroups, groups or taxonomic levels.
force	Logic value set at FALSE by default in order to ask permission to create a pdf file in the workstation of the user.

Value

Barplots (pdf) ilustrating the common spectral elements (peptides, subgroups, groups, taxonomic elements) per sample in a "spectral_count_object".

Examples

data(fecal_waters)
inspect_sample_elements(fecal_waters)

metaprotr documentation built on Feb. 5, 2021, 9:06 a.m.