species_annot_fw: species_annot_fw
In metaprotr: Metaproteomics Post-Processing Analysis
Description
Data containing the abundance of 15 species
expressed in spectral counts and with functional annotation.
Data generated from an Orbitrap Fusion Lumos Tribrid
Mass Spectrometer. The dataset contains the metaproteomes
from three extraction methods: i) "Q" for Qiagen,
ii) "FW" for fecal waters, and iii) "Q_FW" for the mixture
of Qiagen and fecal waters. Data generated in the context of
the project Microbiome Rapid Access (Université Paris-Saclay).
Usage
1
Format
A list of four elements defined as "spectral_count_object" with
functional annotation, generated with the function "add_kegg"
- SC_subgroups
dataframe with 9 samples containing 15
especies with abundance expressed as spectral counts
- metadata
information related to the 9 samples from the
experiment
- peptides_proteins
information related to each of the
1315 identified peptides
- type_object
character indicating the type of object
metaprotr documentation built on Feb. 5, 2021, 9:06 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Data containing the abundance of 15 species expressed in spectral counts and with functional annotation. Data generated from an Orbitrap Fusion Lumos Tribrid Mass Spectrometer. The dataset contains the metaproteomes from three extraction methods: i) "Q" for Qiagen, ii) "FW" for fecal waters, and iii) "Q_FW" for the mixture of Qiagen and fecal waters. Data generated in the context of the project Microbiome Rapid Access (Université Paris-Saclay).
Usage
1 |
Format
A list of four elements defined as "spectral_count_object" with functional annotation, generated with the function "add_kegg"
- SC_subgroups
dataframe with 9 samples containing 15 especies with abundance expressed as spectral counts
- metadata
information related to the 9 samples from the experiment
- peptides_proteins
information related to each of the 1315 identified peptides
- type_object
character indicating the type of object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.