meteR: Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE)

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Fit and plot macroecological patterns predicted by the Maximum Entropy Theory of Ecology (METE).

Author
Andy Rominger, Cory Merow
Date of publication
2016-06-27 17:22:44
Maintainer
Cory Merow <cory.merow@gmail.com>
License
GPL-2
Version
1.2
URLs

View on CRAN

Man pages

anbo
Community abundance data for a desert grassland (anza...
arth
Arthropod community abundance data
downscaleSAR
Downscale the species area relationship (SAR) or endemics...
ebar
Relationship between mean metabolic rate (\bar{epsilon}) and...
empiricalSAR
Empirical SAR or EAR
ipd
Individual Power Distribution
logLik.meteDist
Compute log-likelihood of a meteDist object
logLikZ
Compute log-likelihood z-score
meteDist2Rank
meteDist2Rank
meteESF
meteESF
meteNu
Equation of the PMF for the METE species metabolic rate...
metePhi
Equation of the METE species abundance distribution
metePi
Equation of the PMF of the METE spatial species abundance...
metePsi
Equation of the PMF for the METE individual metabolic rate...
meteR-package
Analyses with the Maximum Entropy Theory of Ecology (METE)
meteSAR
Compute METE species area relationship (SAR)
meteSSF
meteSSF
meteTheta
Equation of the PMF for the METE Intra-specific metabolic...
mse
Computes mean squared error for rank or cdf
mseZ
Compute z-score of mean squared error
plot.damuth
Plot the relationship between abundance and metabolic rate,...
plot.meteDist
Plot METE distributions and associated data
plot.meteRelat
Plot predicted METE relationships and associated observed...
plot.sar
Plot the species abundance distribution (SAR), i.e. objects...
predictESF
predictESF
print.damuth
print.damuth
print.meteDist
Print summaries of 'meteDist' objects
print.meteESF
print.meteESF
print.meteRelat
Print summaries of 'meteRelat' objects
print.sar
print.sar
residuals.meteDist
Compute residuals between METE predictions and data of a...
residuals.meteRelat
Compute residuals between METE predictions and date of a...
sad
METE species abundance distribution
sipd
Generic method to obtain the species-level individual power...
spd
Species Power Distribution
ssad
Species Spatial Abundance Distribution
upscaleSAR
upscale SAR

Files in this package

meteR
meteR/inst
meteR/inst/CITATION
meteR/inst/doc
meteR/inst/doc/meteR_vignette.Rmd
meteR/inst/doc/meteR_vignette.html
meteR/inst/doc/meteR_vignette.R
meteR/tests
meteR/tests/testthat.R
meteR/tests/testthat
meteR/tests/testthat/test_sar.R
meteR/tests/testthat/test_ssad.R
meteR/tests/testthat/test_SAD.R
meteR/tests/testthat/test_zScore.R
meteR/tests/testthat/test_ESF_p151.R
meteR/tests/testthat/test_betas_p179.R
meteR/tests/testthat/test_powerDistrib.R
meteR/NAMESPACE
meteR/data
meteR/data/anbo.rda
meteR/data/arth.rda
meteR/R
meteR/R/sad.meteESF.R
meteR/R/plot.damuth.R
meteR/R/sipd.meteDist.R
meteR/R/plot.sar.R
meteR/R/spd.meteESF.R
meteR/R/residuals.meteRelat.R
meteR/R/residuals.meteDist.R
meteR/R/print.sar.R
meteR/R/print.damuth.R
meteR/R/ecdf.R
meteR/R/ssad.metePi.R
meteR/R/ebar.R
meteR/R/logLik.meteDist.R
meteR/R/plot.meteDist.R
meteR/R/print.mete.R
meteR/R/print.meteDist.R
meteR/R/meteSSF.R
meteR/R/sar_helper_funs.R
meteR/R/meteDist2Rank.R
meteR/R/data_sets.R
meteR/R/meteESF.R
meteR/R/print.meteRelat.R
meteR/R/ipd.meteESF.R
meteR/R/sar.R
meteR/R/plot.meteRelat.R
meteR/vignettes
meteR/vignettes/meteR_vignette_cache
meteR/vignettes/meteR_vignette_cache/html
meteR/vignettes/meteR_vignette_cache/html/__packages
meteR/vignettes/meteR_vignette.Rmd
meteR/vignettes/METE_Fig.png
meteR/MD5
meteR/build
meteR/build/vignette.rds
meteR/DESCRIPTION
meteR/man
meteR/man/meteR-package.Rd
meteR/man/print.sar.Rd
meteR/man/sipd.Rd
meteR/man/ebar.Rd
meteR/man/metePhi.Rd
meteR/man/metePsi.Rd
meteR/man/meteNu.Rd
meteR/man/ipd.Rd
meteR/man/ssad.Rd
meteR/man/residuals.meteRelat.Rd
meteR/man/meteTheta.Rd
meteR/man/print.meteDist.Rd
meteR/man/upscaleSAR.Rd
meteR/man/mseZ.Rd
meteR/man/predictESF.Rd
meteR/man/anbo.Rd
meteR/man/logLikZ.Rd
meteR/man/plot.sar.Rd
meteR/man/empiricalSAR.Rd
meteR/man/logLik.meteDist.Rd
meteR/man/print.meteESF.Rd
meteR/man/metePi.Rd
meteR/man/meteSAR.Rd
meteR/man/sad.Rd
meteR/man/arth.Rd
meteR/man/meteSSF.Rd
meteR/man/plot.meteDist.Rd
meteR/man/meteDist2Rank.Rd
meteR/man/meteESF.Rd
meteR/man/print.damuth.Rd
meteR/man/spd.Rd
meteR/man/mse.Rd
meteR/man/residuals.meteDist.Rd
meteR/man/plot.meteRelat.Rd
meteR/man/plot.damuth.Rd
meteR/man/downscaleSAR.Rd
meteR/man/print.meteRelat.Rd