meteR: Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE)

Fit and plot macroecological patterns predicted by the Maximum Entropy Theory of Ecology (METE).

Install the latest version of this package by entering the following in R:
install.packages("meteR")
AuthorAndy Rominger, Cory Merow
Date of publication2016-06-27 17:22:44
MaintainerCory Merow <cory.merow@gmail.com>
LicenseGPL-2
Version1.2
https://github.com/cmerow/meteR

View on CRAN

Man pages

anbo: Community abundance data for a desert grassland (anza...

arth: Arthropod community abundance data

downscaleSAR: Downscale the species area relationship (SAR) or endemics...

ebar: Relationship between mean metabolic rate (\bar{epsilon}) and...

empiricalSAR: Empirical SAR or EAR

ipd: Individual Power Distribution

logLik.meteDist: Compute log-likelihood of a meteDist object

logLikZ: Compute log-likelihood z-score

meteDist2Rank: meteDist2Rank

meteESF: meteESF

meteNu: Equation of the PMF for the METE species metabolic rate...

metePhi: Equation of the METE species abundance distribution

metePi: Equation of the PMF of the METE spatial species abundance...

metePsi: Equation of the PMF for the METE individual metabolic rate...

meteR-package: Analyses with the Maximum Entropy Theory of Ecology (METE)

meteSAR: Compute METE species area relationship (SAR)

meteSSF: meteSSF

meteTheta: Equation of the PMF for the METE Intra-specific metabolic...

mse: Computes mean squared error for rank or cdf

mseZ: Compute z-score of mean squared error

plot.damuth: Plot the relationship between abundance and metabolic rate,...

plot.meteDist: Plot METE distributions and associated data

plot.meteRelat: Plot predicted METE relationships and associated observed...

plot.sar: Plot the species abundance distribution (SAR), i.e. objects...

predictESF: predictESF

print.damuth: print.damuth

print.meteDist: Print summaries of 'meteDist' objects

print.meteESF: print.meteESF

print.meteRelat: Print summaries of 'meteRelat' objects

print.sar: print.sar

residuals.meteDist: Compute residuals between METE predictions and data of a...

residuals.meteRelat: Compute residuals between METE predictions and date of a...

sad: METE species abundance distribution

sipd: Generic method to obtain the species-level individual power...

spd: Species Power Distribution

ssad: Species Spatial Abundance Distribution

upscaleSAR: upscale SAR

Functions

anbo Man page
arth Man page
downscaleSAR Man page
ebar Man page
empiricalSAR Man page
ipd Man page
ipd.meteESF Man page
logLik.meteDist Man page
logLikZ Man page
logLikZ.meteDist Man page
meteDist2Rank Man page
meteESF Man page
meteNu Man page
metePhi Man page
metePi Man page
metePsi Man page
meteR Man page
meteR-package Man page
meteSAR Man page
meteSSF Man page
meteTheta Man page
mse Man page
mse.meteDist Man page
mseZ Man page
mseZ.meteDist Man page
plot.damuth Man page
plot.meteDist Man page
plot.meteRelat Man page
plot.sar Man page
predictESF Man page
print.damuth Man page
print.meteDist Man page
print.meteESF Man page
print.meteRelat Man page
print.sar Man page
residuals.meteDist Man page
residuals.meteRelat Man page
sad Man page
sad.meteESF Man page
sipd Man page
sipd.meteESF Man page
spd Man page
spd.meteESF Man page
ssad Man page
ssad.meteSSF Man page
upscaleSAR Man page

Files

inst
inst/CITATION
inst/doc
inst/doc/meteR_vignette.Rmd
inst/doc/meteR_vignette.html
inst/doc/meteR_vignette.R
tests
tests/testthat.R
tests/testthat
tests/testthat/test_sar.R tests/testthat/test_ssad.R tests/testthat/test_SAD.R tests/testthat/test_zScore.R tests/testthat/test_ESF_p151.R tests/testthat/test_betas_p179.R tests/testthat/test_powerDistrib.R
NAMESPACE
data
data/anbo.rda
data/arth.rda
R
R/sad.meteESF.R R/plot.damuth.R R/sipd.meteDist.R R/plot.sar.R R/spd.meteESF.R R/residuals.meteRelat.R R/residuals.meteDist.R R/print.sar.R R/print.damuth.R R/ecdf.R R/ssad.metePi.R R/ebar.R R/logLik.meteDist.R R/plot.meteDist.R R/print.mete.R R/print.meteDist.R R/meteSSF.R R/sar_helper_funs.R R/meteDist2Rank.R R/data_sets.R R/meteESF.R R/print.meteRelat.R R/ipd.meteESF.R R/sar.R R/plot.meteRelat.R
vignettes
vignettes/meteR_vignette_cache
vignettes/meteR_vignette_cache/html
vignettes/meteR_vignette_cache/html/__packages
vignettes/meteR_vignette.Rmd
vignettes/METE_Fig.png
MD5
build
build/vignette.rds
DESCRIPTION
man
man/meteR-package.Rd man/print.sar.Rd man/sipd.Rd man/ebar.Rd man/metePhi.Rd man/metePsi.Rd man/meteNu.Rd man/ipd.Rd man/ssad.Rd man/residuals.meteRelat.Rd man/meteTheta.Rd man/print.meteDist.Rd man/upscaleSAR.Rd man/mseZ.Rd man/predictESF.Rd man/anbo.Rd man/logLikZ.Rd man/plot.sar.Rd man/empiricalSAR.Rd man/logLik.meteDist.Rd man/print.meteESF.Rd man/metePi.Rd man/meteSAR.Rd man/sad.Rd man/arth.Rd man/meteSSF.Rd man/plot.meteDist.Rd man/meteDist2Rank.Rd man/meteESF.Rd man/print.damuth.Rd man/spd.Rd man/mse.Rd man/residuals.meteDist.Rd man/plot.meteRelat.Rd man/plot.damuth.Rd man/downscaleSAR.Rd man/print.meteRelat.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.