Nothing
## This is a Translation of Zachary Levine's mewAvg.f90 to R All of
## Zachary's comments are included in this code. With the exception
## of the roxygen2 documentation, unless a comment is specifically
## noted to be Adam's, it is Zachary's
## Zachary Levine 23 May 2013 - 4 June 2013
## The purpose of this module is to implement a particular averaging
## scheme which allows convergence in stochastic optimization. The
## background is described in JC Spall, "Intro. to Stochastic Search
## and Optimization" Wiley, 2003, Chap. 4.
## The idea is to obtain the average from the following sum (for N
## even):
## \bar X = \lim_{N->\infty} {2/N} \sum_{i=(N/2)+1}^N X_i
## That is, we have a moving, expanding average, where the first half
## of the samples are discarded. The first half are discarded because
## they are obtained under conditions which are different than those
## of the converged parameters. (The "half" is parameterized in the
## implementation.)
## In order to use a fixed amount of storage as N->\infty, we will
## have a fixed number of bins (nBin) which are partial sums of the
## series. The number of samples in each bin increases exponentially
## (by a factor of ww, rounded to an integer). The oldest bin is
## phased out as the newest bin is filled.
## To avoid keeping track of many shapes, the X_i is taken to be a 1D
## array.
## At the begining, only one sample is stored per bin until all bins
## have at least one sample. At the very beginning, the mean is set
## to 0.
## Usage
## loop over independent uses
## call mewInit
## loop over sample acquisition and use of mean
## call mewAccum (when new data exists)
## call mewMean (whenever desired)
## call mewFinal (optional - space reuseable in any case)
## ##################################################################/
## Accumulate samples for average
## (1) not all bins are in use yet; assign the new sample to the next
## bin
## (2) all bins are in use
## (2a) accumulate in existing bin
## (2b) eliminate an old bin, and start a new one. Also, the partial
## sum of all the not-old-and-not-new bins is found.
## (2c) error
## (3) error
#' @title Update the class \code{mewTyp}
#'
#' @description Update an S4 object of class \code{mewTyp} with a new
#' data point
#'
#' @details If \code{av} is an S4 object of class \code{mewTyp} that
#' contains the current state of the MEW average and \code{xx} is a
#' new vector of data, the function \code{mewAccum} updates the MEW
#' average with \code{xx}.
#'
#' @param xx (vector double) The vector of data with which to update
#' the MEW aveage
#'
#' @param av (class mewTyp) The current state of the MEW average
#'
#' @return The updated instance of \code{av}
#'
#' @examples
#' n_iter <- 1000
#'
#' av <- mewInit(n_bin = 4, n_xx = 1, ff = 0.5)
#'
#' for (i in 1:n_iter) {
#'
#' value <- runif(n=2)
#' value[1] <- ((cos(value[1]*2*pi))^2)*(1 - exp(-0.01*i))
#' value[2] <- (-((sin(value[2]*2*pi))^2))*(1 - exp(-0.01*i))
#' value <- as.double(value)
#'
#' av <- mewAccum(xx = value, av = av)
#' }
#'
#' @export
#'
#' @useDynLib mewAvg, .registration = TRUE
mewAccum <- function (xx, av) {
## Adam comment
## checking the first argument for type double
if (!is.double(xx)) {
stop("mewAccum: the first argument should be of type double")
}
## Adam comment
## checking the second argument for class mewTyp
if (class(av)[1] != "mewTyp") {
stop("mewAccum: the second argument should be of class mewTyp")
}
## Adam comment
## unpack to simplify syntax
i_new <- av@i_new
i_old <- av@i_old
i_not_new_not_old <- integer(av@n_bin - 2)
if (av@n_bin_use < av@n_bin) {
## (1)
i_new <- as.integer(i_new + 1)
av@n_bin_use <- as.integer(av@n_bin_use + 1)
.Call(replaceCol,
av@xx,
xx,
as.integer(i_new - 1), ## C index starts at zero
av@n_xx)
av@n_sample[i_new] <- as.integer(1)
if (av@n_bin_use == as.integer(1)) {
.Call(assignLongVec,
av@x_mean,
xx,
av@n_xx)
} else {
.Call(binNotFullMean,
av@x_mean,
xx,
av@n_xx,
av@n_bin_use)
}
} else if (av@n_bin_use == av@n_bin) {
## (2)
av@know_mean <- as.integer(0)
if (av@n_sample[i_new] < av@m_sample[i_new]) {
## (2a)
av@n_sample[i_new] <- as.integer(av@n_sample[i_new] + 1)
.Call(addToBin,
av@xx,
xx,
as.integer(i_new - 1), ## C index starts at zero
av@n_xx)
} else if (av@n_sample[i_new] == av@m_sample[i_new]) {
## (2b)
i_new <- i_old
if (i_old < (av@n_bin)) {
i_old <- as.integer(i_old + 1)
} else {
i_old <- as.integer(1)
}
.Call(replaceCol,
av@xx,
xx,
as.integer(i_new - 1), ## C index starts at zero
av@n_xx)
av@n_sample[i_new] <- as.integer(1)
av@a_sample <- av@a_sample*av@ww
av@m_sample[i_new] <- as.integer(round(av@a_sample))
j <- as.integer(0)
for (i in 1:av@n_bin) {
if ((i == i_old) || (i == i_new)) {
next
}
j <- as.integer(j + 1)
i_not_new_not_old[j] <- as.integer(i)
}
av@n_part <- as.integer(sum(av@n_sample[i_not_new_not_old]))
.Call(addxSumPart,
av@x_sum_part,
av@xx,
i_not_new_not_old,
av@n_xx,
av@n_bin)
} else {
## (2c)
cat(paste0("mewAccum: likely programming error i_new is ",
i_new, "\n"))
cat(paste0("mewAccum: n_sample[i_new] is ",
av@n_sample[i_new], "\n"))
cat("mewAccum: need <= \n")
cat(paste0("mewAccum: m_sample[i_new] which is ",
av@m_sample[i_new], "\n\n"))
stop()
}
} else {
## (3)
cat("mewAccum: likely programming error\n")
cat(paste0("mewAccum: n_bin_use is ",
av@n_bin_use, "\n"))
cat("mewAccum: need <= \n")
cat(paste0("mewAccum: n_bin which is ",
av@n_bin, "\n\n"))
stop()
}
av@i_new <- as.integer(i_new)
av@i_old <- as.integer(i_old)
return(av)
}
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.