API for miLineage
Association Tests for Microbial Lineages on a Taxonomic Tree
| Global functions | |
|---|---|
| .Beta.neg.loglik.PAR2 | Source code |
| .Beta.neg.score.PAR2 | Source code |
| .Beta.optim.PAR2 | Source code |
| .Ei.beta | Source code |
| .Ei.beta.pos | Source code |
| .F.test | Source code |
| .GEE.zero | Source code |
| .Logit.neg.loglik | Source code |
| .Logit.neg.score | Source code |
| .Logit.optim | Source code |
| .Pi.alpha | Source code |
| .Score.test | Source code |
| .Score.test.simple | Source code |
| .Score.test.simple.restrict | Source code |
| .Score.test.simple2 | Source code |
| .Score.test.simple2.restrict | Source code |
| .Score.test.stat | Source code |
| .Score.test.stat.4Gresampling | Source code |
| .Score.test.stat.pos | Source code |
| .Score.test.stat.pos.4resampling | Source code |
| .Score.test.stat.zero | Source code |
| .Score.test.stat.zero.4Gresampling | Source code |
| .Score.test2 | Source code |
| .Score.test2.zerowald | Source code |
| .Tstat | Source code |
| .Tstat.zero | Source code |
| .ZIGDM.EM.PAR2 | Source code |
| .ZIGDM.abun.test.PAR2 | Source code |
| .ZIGDM.disp.test.PAR2 | Source code |
| .ZIGDM.freq.test.PAR2 | Source code |
| .ZIGDM.omni.test.PAR2 | Source code |
| .ZIGDM.stat.abun.perm | Source code |
| .ZIGDM.stat.disp.perm | Source code |
| .ZIGDM.stat.freq.perm | Source code |
| .ZIGDM.stat.omni.perm | Source code |
| .ZIGDM.stat.target.perm | Source code |
| .diag2 | Source code |
| .fun.hessian.alpha | Source code |
| .fun.hessian.beta | Source code |
| .fun.hessian.beta.pos | Source code |
| .fun.neg.loglik.beta | Source code |
| .fun.neg.loglik.beta.pos | Source code |
| .fun.neg.score.beta | Source code |
| .fun.neg.score.beta.pos | Source code |
| .fun.score.i.alpha | Source code |
| .fun.score.i.beta | Source code |
| .fun.score.i.beta.pos | Source code |
| .lbeta2 | Source code |
| .rP.Y.par | Source code |
| .resample.work.one | Source code |
| .resample.work.pos | Source code |
| .resample.work.two | Source code |
| .resample.work.zero | Source code |
| .sampling.strata | Source code |
| .simes.test | Source code |
| QCAT | Man page Source code |
| QCAT_GEE | Man page Source code |
| ZIGDM | Man page Source code |
| data.real | Man page |
| data.toy | Man page |
| miLineage | Man page |
| miLineage-package | Man page |
