API for miLineage
Association Tests for Microbial Lineages on a Taxonomic Tree

Global functions
Beta.neg.loglik.PAR2 Source code
Beta.neg.score.PAR2 Source code
Beta.optim.PAR2 Source code
Ei.beta Source code
Ei.beta.pos Source code
GEE.zero Source code
Pi.alpha Source code
QCAT Man page Source code
QCAT_GEE Man page Source code
Score.test Source code
Score.test.simple Source code
Score.test.simple.restrict Source code
Score.test.simple2 Source code
Score.test.simple2.restrict Source code
Score.test.stat Source code
Score.test.stat.4Gresampling Source code
Score.test.stat.pos Source code
Score.test.stat.pos.4resampling Source code
Score.test.stat.zero Source code
Score.test.stat.zero.4Gresampling Source code
Score.test2 Source code
Score.test2.zerowald Source code
Tstat Source code
Tstat.zero Source code
ZIGDM Man page Source code
ZIGDM.EM.PAR2 Source code
ZIGDM.abun.test.PAR2 Source code
ZIGDM.disp.test.PAR2 Source code
ZIGDM.freq.test.PAR2 Source code
ZIGDM.omni.test.PAR2 Source code
ZIGDM.stat.abun.perm Source code
ZIGDM.stat.disp.perm Source code
ZIGDM.stat.freq.perm Source code
ZIGDM.stat.omni.perm Source code
ZIGDM.stat.target.perm Source code
data.real Man page
data.toy Man page
diag2 Source code
fun.hessian.alpha Source code
fun.hessian.beta Source code
fun.hessian.beta.pos Source code
fun.neg.loglik.beta Source code
fun.neg.loglik.beta.pos Source code
fun.neg.score.beta Source code
fun.neg.score.beta.pos Source code
fun.score.i.alpha Source code
fun.score.i.beta Source code
fun.score.i.beta.pos Source code
lbeta2 Source code
miLineage Man page
miLineage-package Man page
ogit.neg.loglik Source code
ogit.neg.score Source code
ogit.optim Source code
rP.Y.par Source code
resample.work.one Source code
resample.work.pos Source code
resample.work.two Source code
resample.work.zero Source code
sampling.strata Source code
simes.test Source code
test Source code
miLineage documentation built on March 23, 2018, 1:04 a.m.